TreatCFM000880's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | 0.00642453 | GO:0046537 |
| phytol kinase activity | 0.00642453 | GO:0010276 |
| phytol salvage pathway | 0.006746741 | plantCyc |
| protein methyltransferase activity | 0.010703278 | GO:0008276 |
| vitamin E biosynthetic process | 0.025663968 | GO:0010189 |
| protein methylation | 0.025663968 | GO:0006479 |
| regulation of signal transduction | 0.025663968 | GO:0009966 |
| gluconeogenesis I | 0.035516166 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.035516166 | plantCyc |
| glycolysis IV (plant cytosol) | 0.035516166 | plantCyc |
| Rubisco shunt | 0.035516166 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004297 | AT5G04490 (2.00E-70) | VTE5|vitamin E pathway gene 5 |
| CRO_T004923 | - | - |
| CRO_T005242 | - | - |
| CRO_T006858 | - | - |
| CRO_T008109 | AT1G03365 (4.00E-05) | RING/U-box superfamily protein |
| CRO_T009111 | AT1G77140 (0) | BEN2|bfa-visualized endocytic trafficking defective 2; VPS45|vacuolar protein sorting 45 |
| CRO_T021486 | AT5G64150 (3.00E-58) | RNA methyltransferase family protein |
| CRO_T022255 | - | - |
| CRO_T024419 | AT3G30841 (0) | Cofactor-independent phosphoglycerate mutase |
| CRO_T028061 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000008 | Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | details |
| TreatCFM000009 | phytol salvage pathway | details |
| TreatCFM000015 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) phytol salvage pathway | details |
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000024 | Arp2/3 protein complex Arp2/3 complex-mediated actin nucleation mitochondrial small ribosomal subunit protein methylation protein methyltransferase activity apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis | details |
| TreatCFM000216 | phytol salvage pathway phytol kinase activity plasma membrane respiratory chain complex I vitamin E biosynthetic process ATP synthesis coupled electron transport NADH dehydrogenase (ubiquinone) activity Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: NAC | details |
| TreatCFM000241 | phytol salvage pathway phytol kinase activity | details |
| TreatCFM000242 | protein methylation mitochondrial small ribosomal subunit protein methyltransferase activity | details |
| TreatCFM000277 | protein methylation protein methyltransferase activity apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis curcumin glucoside biosynthesis sesaminol glucoside biosynthesis quercetin gentiotetraside biosynthesis transferase activity, transferring glycosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000294 | phytol salvage pathway phytol kinase activity vitamin E biosynthetic process chloroplast DNA-directed RNA polymerase activity Purine metabolism | details |
| TreatCFM000310 | Cyanoamino acid metabolism cyanide biosynthetic process protein methylation | details |
| TreatCFM000345 | DNA-directed RNA polymerase activity Purine metabolism protein methyltransferase activity protein methylation Transcription_related, Transcription factor: HB | details |
| TreatCFM000420 | phytol kinase activity phytol salvage pathway vitamin E biosynthetic process ATP biosynthetic process proton transport Photosynthesis chloroplast part thylakoid | details |
| TreatCFM000554 | protein methylation protein methyltransferase activity | details |
| TreatCFM000798 | phytol salvage pathway Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase phytol kinase activity vitamin E biosynthetic process non-membrane spanning protein tyrosine kinase activity | details |
| TreatCFM000963 | intracellular protein transport phosphatidylethanolamine biosynthesis I 1-phosphatidylinositol 4-kinase activity protein methyltransferase activity voltage-gated chloride channel activity protein methylation chloride transport phosphatidylinositol-mediated signaling 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Ran GTPase binding regulation of anion transmembrane transport phosphatidylinositol phosphorylation unidimensional cell growth ion transmembrane transport Inositol phosphate metabolism Lysosome clathrin adaptor complex protein transporter activity vesicle-mediated transport RNA transport integral component of membrane | details |
| TreatCFM001609 | mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity arylformamidase activity tryptophan catabolic process to kynurenine DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping phospholipid-translocating ATPase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity phospholipid translocation peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity mRNA surveillance pathway DNA recombination gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt DNA repair | details |
| TreatCFM001778 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity signal recognition particle receptor complex signal recognition particle binding SRP-dependent cotranslational protein targeting to membrane cytoplasmic translation gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Protein export | details |
Expression profiles
 Show details about module gene expression profiling |