TreatCFM000418's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| riboflavin synthase complex | 0.001950499 | GO:0009349 |
| 6,7-dimethyl-8-ribityllumazine synthase activity | 0.002955301 | GO:0000906 |
| riboflavin biosynthetic process | 0.003454893 | GO:0009231 |
| sulfate transmembrane transport | 0.003454893 | GO:1902358 |
| esterified suberin biosynthesis | 0.004516602 | plantCyc |
| flavin biosynthesis I (bacteria and plants) | 0.004516602 | plantCyc |
| Cutin, suberine and wax biosynthesis | 0.006373082 | KEGG pathway |
| Riboflavin metabolism | 0.006373082 | KEGG pathway |
| secondary active sulfate transmembrane transporter activity | 0.009596925 | GO:0008271 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.025518166 | GO:0016747 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012412 | AT2G44050 (3.00E-67) | COS1|COI1 SUPPRESSOR1; COS1|coronatine insensitive1 suppressor |
| CRO_T012916 | AT1G29195 (4.00E-39) | unknown protein |
| CRO_T014363 | - | - |
| CRO_T022618 | AT1G77990 (0) | SULTR2; 2|SULPHATE TRANSPORTER 2; 2 |
| CRO_T025616 | AT1G33490 (1.00E-47) | unknown protein |
| CRO_T032133 | AT5G41040 (9.00E-54) | ASFT|aliphatic suberin feruloyl-transferase; HHT|hydroxycinnamoyl- CoA:ω -hydroxyacid O-hydroxycinnamoyltransferase; RWP1|REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000016 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex cellular process localization mitochondrion organization 6,7-dimethyl-8-ribityllumazine synthase activity Transcription_related, Transcription factor: ARR-B riboflavin biosynthetic process | details |
| TreatCFM000018 | riboflavin synthase complex flavin biosynthesis I (bacteria and plants) Diterpenoid biosynthesis Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity mitochondrion organization gibberellin catabolic process C-19 gibberellin 2-beta-dioxygenase activity riboflavin biosynthetic process response to light stimulus Transcription_related, Transcription factor: HB Transcription_related, Transcription factor: MYB | details |
| TreatCFM000030 | flavin biosynthesis I (bacteria and plants) | details |
| TreatCFM000034 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex regulation of carbohydrate metabolic process mitochondrion organization L-methionine biosynthetic process from methylthioadenosine riboflavin biosynthetic process 6,7-dimethyl-8-ribityllumazine synthase activity eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor activity S-methyl-5-thioribose-1-phosphate isomerase activity Riboflavin metabolism regulation of translational initiation | details |
| TreatCFM000057 | flavin biosynthesis I (bacteria and plants) Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc riboflavin biosynthetic process mitochondrion organization anchored component of membrane pollen tube xyloglucan metabolic process cell wall biogenesis | details |
| TreatCFM000070 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex Transcription_related, Transcription factor: ARR-B 6,7-dimethyl-8-ribityllumazine synthase activity | details |
| TreatCFM000085 | riboflavin synthase complex Transcription_related, Transcription factor: C2C2-YABBY 6,7-dimethyl-8-ribityllumazine synthase activity leucocyanidin oxygenase activity Flavonoid biosynthesis Riboflavin metabolism anthocyanin biosynthesis proanthocyanidins biosynthesis from flavanols flavin biosynthesis I (bacteria and plants) inflorescence meristem growth specification of floral organ identity fruit development abaxial cell fate specification specification of organ position mitochondrion organization anthocyanin-containing compound biosynthetic process meristem structural organization riboflavin biosynthetic process regulation of flower development L-ascorbic acid binding | details |
| TreatCFM000106 | methylation riboflavin synthase complex flavin biosynthesis I (bacteria and plants) 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin biosynthetic process cellulose catabolic process Riboflavin metabolism adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity Starch and sucrose metabolism S-adenosylmethionine-dependent methyltransferase activity methyltransferase activity | details |
| TreatCFM000177 | flavin biosynthesis I (bacteria and plants) 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex Riboflavin metabolism riboflavin biosynthetic process regulation of stomatal opening Ribosome biogenesis in eukaryotes response to biotic stimulus drug transmembrane transport defense response | details |
| TreatCFM000378 | 6,7-dimethyl-8-ribityllumazine synthase activity ligase activity 1,2-alpha-L-fucosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc riboflavin synthase complex flavin biosynthesis I (bacteria and plants) tetrahydrofolate biosynthesis II Folate biosynthesis Other glycan degradation Riboflavin metabolism Transcription_related, Transcription regulator: AUX/IAA riboflavin biosynthetic process mitochondrion organization folic acid-containing compound biosynthetic process auxin-activated signaling pathway | details |
| TreatCFM000512 | 6,7-dimethyl-8-ribityllumazine synthase activity sequence-specific DNA binding flavin biosynthesis I (bacteria and plants) Riboflavin metabolism nucleus riboflavin synthase complex regulation of transcription, DNA-templated riboflavin biosynthetic process Transcription_related, Transcription factor: HB | details |
| TreatCFM000534 | riboflavin synthase complex Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity mitochondrion organization riboflavin biosynthetic process phenylpropanoid biosynthetic process methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis superpathway of scopolin and esculin biosynthesis flavin biosynthesis I (bacteria and plants) syringetin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis cell part triacylglycerol degradation Phenylpropanoid biosynthesis | details |
| TreatCFM000846 | riboflavin synthase complex flavin biosynthesis I (bacteria and plants) Riboflavin metabolism Transcription_related, Transcription factor: MIKC 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin biosynthetic process | details |
| TreatCFM000847 | riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity flavin biosynthesis I (bacteria and plants) riboflavin biosynthetic process Riboflavin metabolism protein binding | details |
| TreatCFM001553 | riboflavin synthase complex Riboflavin metabolism arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) sphingolipid metabolic process flavin biosynthesis I (bacteria and plants) 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |