TreatCFM000475's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 5-aminoimidazole ribonucleotide biosynthesis I | 0.009188809 | plantCyc |
| cuticular wax biosynthesis | 0.009188809 | plantCyc |
| tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate | 0.009188809 | plantCyc |
| glycolipid metabolic process | 0.032011738 | GO:0006664 |
| alkane biosynthetic process | 0.032011738 | GO:0043447 |
| cuticle hydrocarbon biosynthetic process | 0.032011738 | GO:0006723 |
| cytoskeleton-dependent intracellular transport | 0.032011738 | GO:0030705 |
| wax biosynthetic process | 0.032011738 | GO:0010025 |
| regulation of microtubule-based process | 0.032011738 | GO:0032886 |
| protein localization | 0.032918578 | GO:0008104 |
| lagging strand elongation | 0.034121654 | GO:0006273 |
| DNA ligation involved in DNA repair | 0.034121654 | GO:0051103 |
| pollen sperm cell differentiation | 0.034540012 | GO:0048235 |
| 'de novo' IMP biosynthetic process | 0.034880658 | GO:0006189 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.03683877 | cazy family |
| vacuole | 0.04088136 | GO:0005773 |
| tRNA (guanine(37)-N(1))-methyltransferase activity | 0.044001798 | GO:0052906 |
| glucosyltransferase activity | 0.044001798 | GO:0046527 |
| phosphoribosylglycinamide formyltransferase activity | 0.044001798 | GO:0004644 |
| alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 0.044001798 | GO:0003825 |
| trehalose biosynthetic process | 0.044721229 | GO:0005992 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.047709779 | cazy family |
| Transcription_related, Transcription regulator: GNAT | 0.047709779 | TF family |
| ATP-dependent microtubule motor activity, plus-end-directed | 0.048844695 | GO:0008574 |
| DNA ligase (ATP) activity | 0.048844695 | GO:0003910 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001593 | AT1G08130 (3.00E-37) | ATLIG1|DNA ligase 1 |
| CRO_T002170 | AT1G45130 (9.00E-45) | BGAL5|beta-galactosidase 5 |
| CRO_T002561 | AT1G47890 (5.00E-104) | AtRLP7|receptor like protein 7 |
| CRO_T006960 | AT4G27340 (0) | Met-10+ like family protein |
| CRO_T007803 | AT5G58280 (3.00E-05) | AP2/B3-like transcriptional factor family protein |
| CRO_T009247 | AT3G54870 (0) | ARK1|ARMADILLO REPEAT-CONTAINING KINESIN 1; AtKINUc|KINESIN Ungrouped clade, gene A; CAE1|CA-ROP2 ENHANCER 1; MRH2|MORPHOGENESIS OF ROOT HAIR 2 |
| CRO_T013991 | AT5G57800 (0) | CER3|ECERIFERUM 3; FLP1|FACELESS POLLEN 1 |
| CRO_T014262 | AT1G31220 (2.00E-86) | Formyl transferase |
| CRO_T022793 | AT1G16980 (0) | ATTPS2|trehalose-phosphatase/synthase 2; TPS2|TREHALOSE -6-PHOSPHATASE SYNTHASE S2 |
| CRO_T023432 | AT1G15220 (2.00E-52) | ATCCMH; CCMH|cytochrome c biogenesis protein family |
| CRO_T025142 | AT5G50320 (2.00E-10) | AtELP3|Elongator protein 3; EAST1|enhancer-of-asymmetric leaves-two 1; ELO3|ELONGATA 3; HAC8|HISTONE ACETYLTRANSFERASE 8; HAG3|HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3 |
| CRO_T026554 | AT5G23850 (9.00E-154) | Arabidopsis thaliana protein of unknown function (DUF821) |
| CRO_T029581 | AT2G46420 (1.00E-10) | Plant protein 1589 of unknown function |
| CRO_T029628 | AT5G54530 (3.00E-22) | Protein of unknown function, DUF538 |
| CRO_T029693 | AT3G07610 (8.00E-21) | IBM1|increase in bonsai methylation 1 |
| CRO_T031168 | AT1G62930 (1.00E-53) | RPF3|RNA processing factor 3 |
| CRO_T032783 | AT3G19720 (1.00E-10) | ARC5|ACCUMULATION AND REPLICATION OF CHLOROPLAST 5; DRP5B|Dynamin related protein 5B |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000113 | monolayer-surrounded lipid storage body seed oilbody biogenesis response to freezing lipid storage Fructose and mannose metabolism mannan catabolic process Transcription_related, Transcription regulator: GNAT Ubiquitin_Proteasome_system, DUB: ULP integral component of membrane N-acetyltransferase activity iron-sulfur cluster binding mannan endo-1,4-beta-mannosidase activity | details |
| TreatCFM000116 | details | |
| TreatCFM000802 | Ubiquitin mediated proteolysis protein complex integral component of membrane calmodulin binding lipid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001077 | chromosome Cell cycle - yeast formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase plant sterol biosynthesis starch biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity DNA catabolic process, endonucleolytic steroid biosynthetic process chromosome organization Transcription_related, Transcription regulator: GNAT N-acetyltransferase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity cellular transition metal ion homeostasis iron-sulfur cluster binding metal ion transport | details |
Expression profiles
 Show details about module gene expression profiling |