TreatCFM001077's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chromosome | 0.000337809 | GO:0005694 |
| Cell cycle - yeast | 0.004130092 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.01229848 | cazy family |
| Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | 0.01229848 | kinase family |
| plant sterol biosynthesis | 0.013686843 | plantCyc |
| starch biosynthesis | 0.013686843 | plantCyc |
| sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity | 0.015046147 | GO:0047012 |
| DNA catabolic process, endonucleolytic | 0.017857394 | GO:0000737 |
| steroid biosynthetic process | 0.017857394 | GO:0006694 |
| chromosome organization | 0.017857394 | GO:0051276 |
| Transcription_related, Transcription regulator: GNAT | 0.021272071 | TF family |
| N-acetyltransferase activity | 0.032552335 | GO:0008080 |
| 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 0.032552335 | GO:0003854 |
| cellular transition metal ion homeostasis | 0.041402699 | GO:0046916 |
| iron-sulfur cluster binding | 0.043137059 | GO:0051536 |
| metal ion transport | 0.043748554 | GO:0030001 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001362 | AT5G56980 (2.00E-12) | unknown protein |
| CRO_T003421 | AT5G55560 (3.00E-129) | Protein kinase superfamily protein |
| CRO_T007195 | - | - |
| CRO_T011126 | AT5G24580 (4.00E-14) | Heavy metal transport/detoxification superfamily protein |
| CRO_T016434 | AT1G53820 (8.00E-16) | RING/U-box superfamily protein |
| CRO_T025142 | AT5G50320 (2.00E-10) | AtELP3|Elongator protein 3; EAST1|enhancer-of-asymmetric leaves-two 1; ELO3|ELONGATA 3; HAC8|HISTONE ACETYLTRANSFERASE 8; HAG3|HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3 |
| CRO_T026097 | AT3G01180 (0) | AtSS2|starch synthase 2 |
| CRO_T026309 | AT2G29760 (3.00E-115) | OTP81|ORGANELLE TRANSCRIPT PROCESSING 81 |
| CRO_T027095 | AT2G33630 (0) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T031268 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000113 | monolayer-surrounded lipid storage body seed oilbody biogenesis response to freezing lipid storage Fructose and mannose metabolism mannan catabolic process Transcription_related, Transcription regulator: GNAT Ubiquitin_Proteasome_system, DUB: ULP integral component of membrane N-acetyltransferase activity iron-sulfur cluster binding mannan endo-1,4-beta-mannosidase activity | details |
| TreatCFM000116 | details | |
| TreatCFM000201 | chromosome DNA catabolic process, endonucleolytic menaquinone biosynthetic process 1,4-dihydroxy-2-naphthoyl-CoA synthase activity chromosome organization 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) starch biosynthesis Cell cycle - yeast Ubiquinone and other terpenoid-quinone biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucan endo-1,3-beta-D-glucosidase activity Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Peroxisome | details |
| TreatCFM000399 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase Nitrogen metabolism plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity one-carbon metabolic process steroid biosynthetic process carbonate dehydratase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity endoplasmic reticulum | details |
| TreatCFM000475 | 5-aminoimidazole ribonucleotide biosynthesis I cuticular wax biosynthesis tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate glycolipid metabolic process alkane biosynthetic process cuticle hydrocarbon biosynthetic process cytoskeleton-dependent intracellular transport wax biosynthetic process regulation of microtubule-based process protein localization lagging strand elongation DNA ligation involved in DNA repair pollen sperm cell differentiation 'de novo' IMP biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc vacuole tRNA (guanine(37)-N(1))-methyltransferase activity glucosyltransferase activity phosphoribosylglycinamide formyltransferase activity alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity trehalose biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: GNAT ATP-dependent microtubule motor activity, plus-end-directed DNA ligase (ATP) activity | details |
| TreatCFM000546 | plant sterol biosynthesis Glycerolipid metabolism sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity transcription factor activity, transcription factor binding glycerol-3-phosphate 2-O-acyltransferase activity pollen sperm cell differentiation steroid biosynthetic process cutin biosynthetic process phosphatase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: GRAS Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM000932 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase membrane part chloroplast manganese ion binding heat shock protein binding nutrient reservoir activity unfolded protein binding | details |
| TreatCFM000960 | flavin adenine dinucleotide binding sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity oxidation-reduction process steroid biosynthetic process plant sterol biosynthesis L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 oxidoreductase activity, acting on CH-OH group of donors | details |
| TreatCFM001005 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity D-arabinono-1,4-lactone oxidase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity L-gulonolactone oxidase activity anthocyanidin modification (Arabidopsis) anthocyanin biosynthesis anthocyanin biosynthesis (delphinidin 3-O-glucoside) anthocyanin biosynthesis (pelargonidin 3-O-glucoside) brassinosteroids inactivation plant sterol biosynthesis quercetin glucoside biosynthesis (Allium) steroid biosynthetic process quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity flavonoid glucuronidation oxidation-reduction process flavonoid biosynthetic process flavin adenine dinucleotide binding | details |
| TreatCFM001063 | plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process ribosomal large subunit assembly Protein processing in endoplasmic reticulum unfolded protein binding protein serine/threonine phosphatase activity response to stress | details |
| TreatCFM001078 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | details |
| TreatCFM001187 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity ribose-5-phosphate isomerase activity chromosome organization steroid biosynthetic process pentose-phosphate shunt, non-oxidative branch Cell cycle - yeast 3-beta-hydroxy-delta5-steroid dehydrogenase activity cellulose catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc cellulase activity Calvin-Benson-Bassham cycle pentose phosphate pathway (non-oxidative branch) plant sterol biosynthesis Rubisco shunt starch biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc chromosome Transcription_related, Transcription factor: C2H2 carbohydrate binding | details |
| TreatCFM001672 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity Ribosome biogenesis in eukaryotes protein serine/threonine phosphatase activity protein dephosphorylation | details |
| TreatCFM001674 | Transcription_related, Transcription factor: Trihelix plant sterol biosynthesis sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process ribosomal large subunit assembly Protein processing in endoplasmic reticulum unfolded protein binding protein serine/threonine phosphatase activity response to stress | details |
Expression profiles
 Show details about module gene expression profiling |