TreatCFM000567's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: WRKY | 0.001376141 | TF family |
| phaseic acid biosynthesis | 0.003069293 | plantCyc |
| Cytochrome_P450, Cytochrome P450: CYP87A | 0.004800023 | CYP450 family |
| Transcription_related, Transcription factor: EIL | 0.006396628 | TF family |
| Transcription_related, Transcription factor: NF-YB | 0.009584742 | TF family |
| mitochondrial proton-transporting ATP synthase complex | 0.027853833 | GO:0005753 |
| proton-transporting ATP synthase complex, coupling factor F(o) | 0.027853833 | GO:0045263 |
| regulation of transcription, DNA-templated | 0.03237925 | GO:0006355 |
| mitochondrial ATP synthesis coupled proton transport | 0.033342229 | GO:0042776 |
| cellular respiration | 0.033342229 | GO:0045333 |
| xenobiotic transport | 0.039268345 | GO:0042908 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007661 | AT5G45340 (3.00E-63) | CYP707A3|cytochrome P450, family 707, subfamily A, polypeptide 3 |
| CRO_T010033 | - | - |
| CRO_T010302 | AT1G09030 (9.00E-41) | NF-YB4|nuclear factor Y, subunit B4 |
| CRO_T012001 | AT2G07741 (1.00E-32) | ATPase, F0 complex, subunit A protein |
| CRO_T013970 | AT1G13310 (7.00E-80) | Endosomal targeting BRO1-like domain-containing protein |
| CRO_T016350 | AT4G23620 (1.00E-46) | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain |
| CRO_T020492 | AT3G13225 (5.00E-18) | WW domain-containing protein |
| CRO_T022373 | AT1G67030 (5.00E-25) | ZFP6|zinc finger protein 6 |
| CRO_T024697 | AT1G09320 (2.00E-16) | agenet domain-containing protein |
| CRO_T030654 | AT5G64810 (8.00E-22) | ATWRKY51|WRKY DNA-BINDING PROTEIN 51 |
| CRO_T031400 | AT1G53390 (0) | ABCG24|ATP-binding cassette G24 |
| CRO_T031900 | AT2G27050 (7.00E-30) | EIL1|ETHYLENE-INSENSITIVE3-like 1 |
| CRO_T031986 | AT1G55600 (1.00E-19) | MINI3|MINISEED 3; WRKY10|WRKY DNA-binding protein 10 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000878 | Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: EIL transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated MAPK signaling pathway - plant sequence-specific DNA binding | details |
| TreatCFM000924 | Cdc73/Paf1 complex histone methylation negative regulation of flower development regulation of histone H3-K4 methylation RNA polymerase II core binding Fatty acid metabolism Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: PHD positive regulation of transcription, DNA-templated | details |
| TreatCFM001247 | histone methylation regulation of histone H3-K4 methylation negative regulation of flower development Cdc73/Paf1 complex myosin complex RNA polymerase II core binding DNA topoisomerase type I activity motor activity Fatty acid metabolism positive regulation of transcription, DNA-templated actin binding membrane | details |
| TreatCFM001559 | homogalacturonan biosynthesis Amino sugar and nucleotide sugar metabolism pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: PHD Golgi membrane | details |
| TreatCFM001735 | Cytochrome_P450, Cytochrome P450: CYP701A GA12 biosynthesis ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidation to kaurenoic acid nucleotide-sugar transport gibberellin biosynthetic process cinnamoyl-CoA reductase activity cation binding Diterpenoid biosynthesis chloroplast outer membrane Transcription_related, Transcription factor: bHLH single-organism cellular process MAPK signaling pathway - plant coenzyme binding phosphoprotein phosphatase activity | details |
| TreatCFM001886 | Transcription_related, Transcription factor: G2-like S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis aminoacyl-tRNA ligase activity methionine adenosyltransferase activity ribokinase activity adenosine kinase activity nucleic acid binding AMP biosynthetic process D-ribose metabolic process S-adenosylmethionine biosynthetic process tRNA aminoacylation for protein translation ethylene biosynthesis I (plants) one-carbon metabolic process carbohydrate phosphorylation metal ion binding glycolysis IV (plant cytosol) Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids glycolysis I (from glucose 6-phosphate) single-organism cellular process chloroplast Photosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |