TreatCFM001559's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homogalacturonan biosynthesis | 0.004542899 | plantCyc |
| Amino sugar and nucleotide sugar metabolism | 0.016638898 | KEGG pathway |
| pectin biosynthetic process | 0.022388193 | GO:0045489 |
| polygalacturonate 4-alpha-galacturonosyltransferase activity | 0.033028268 | GO:0047262 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.038413615 | cazy family |
| Transcription_related, Transcription factor: WRKY | 0.038413615 | TF family |
| Transcription_related, Transcription regulator: PHD | 0.038413615 | TF family |
| Golgi membrane | 0.039499805 | GO:0000139 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002040 | AT1G53040 (2.00E-164) | Protein of unknown function (DUF616) |
| CRO_T010133 | AT1G18580 (0) | GAUT11|galacturonosyltransferase 11 |
| CRO_T013970 | AT1G13310 (7.00E-80) | Endosomal targeting BRO1-like domain-containing protein |
| CRO_T024558 | - | - |
| CRO_T027301 | AT5G24330 (4.00E-107) | ATXR6|ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6; SDG34|SET DOMAIN PROTEIN 34 |
| CRO_T028539 | AT3G04140 (3.00E-14) | Ankyrin repeat family protein |
| CRO_T031986 | AT1G55600 (1.00E-19) | MINI3|MINISEED 3; WRKY10|WRKY DNA-binding protein 10 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000406 | lipid IVA biosynthesis box H/ACA snoRNP complex homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc polygalacturonate 4-alpha-galacturonosyltransferase activity pectin biosynthetic process pseudouridine synthesis transferase activity, transferring acyl groups other than amino-acyl groups ribosome biogenesis Amino sugar and nucleotide sugar metabolism Ribosome biogenesis in eukaryotes cell wall organization Golgi membrane | details |
| TreatCFM000567 | Transcription_related, Transcription factor: WRKY phaseic acid biosynthesis Cytochrome_P450, Cytochrome P450: CYP87A Transcription_related, Transcription factor: EIL Transcription_related, Transcription factor: NF-YB mitochondrial proton-transporting ATP synthase complex proton-transporting ATP synthase complex, coupling factor F(o) regulation of transcription, DNA-templated mitochondrial ATP synthesis coupled proton transport cellular respiration xenobiotic transport | details |
| TreatCFM000878 | Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: EIL transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated MAPK signaling pathway - plant sequence-specific DNA binding | details |
| TreatCFM000924 | Cdc73/Paf1 complex histone methylation negative regulation of flower development regulation of histone H3-K4 methylation RNA polymerase II core binding Fatty acid metabolism Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: PHD positive regulation of transcription, DNA-templated | details |
| TreatCFM000935 | DNA-directed RNA polymerase I complex transcription from RNA polymerase I promoter recognition of pollen trehalose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity RNA polymerase I activity Starch and sucrose metabolism | details |
| TreatCFM000982 | D-myo-inositol-5-phosphate metabolism phytate degradation I Transcription_related, Transcription regulator: PHD peptidyl-tyrosine dephosphorylation Glycolysis / Gluconeogenesis Inositol phosphate metabolism Plant-pathogen interaction protein tyrosine phosphatase activity acid phosphatase activity dephosphorylation | details |
| TreatCFM001247 | histone methylation regulation of histone H3-K4 methylation negative regulation of flower development Cdc73/Paf1 complex myosin complex RNA polymerase II core binding DNA topoisomerase type I activity motor activity Fatty acid metabolism positive regulation of transcription, DNA-templated actin binding membrane | details |
Expression profiles
 Show details about module gene expression profiling |