TreatCFM000668's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrial translational elongation | 0.009652115 | GO:0070125 |
| positive regulation of transcription from RNA polymerase I promoter | 0.009652115 | GO:0045943 |
| t-UTP complex | 0.009654255 | GO:0034455 |
| fatty acid elongation -- saturated | 0.011285984 | plantCyc |
| L-cysteine biosynthesis I | 0.011285984 | plantCyc |
| seleno-amino acid biosynthesis | 0.011285984 | plantCyc |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.013665323 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.017164039 | plantCyc |
| 90S preribosome | 0.019295674 | GO:0030686 |
| palmitate biosynthesis II (bacteria and plants) | 0.024662048 | plantCyc |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.026490418 | GO:0000462 |
| DNA biosynthetic process | 0.026490418 | GO:0071897 |
| hydro-lyase activity | 0.029444806 | GO:0016836 |
| RNA processing | 0.035263197 | GO:0006396 |
| snoRNA binding | 0.035284198 | GO:0030515 |
| DNA-directed DNA polymerase activity | 0.035284198 | GO:0003887 |
| poly(A) RNA binding | 0.035284198 | GO:0044822 |
| fatty acid biosynthetic process | 0.035765769 | GO:0006633 |
| cytoplasm | 0.035790596 | GO:0005737 |
| translation elongation factor activity | 0.041131456 | GO:0003746 |
| Fatty acid metabolism | 0.041194722 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.041194722 | KEGG pathway |
| small-subunit processome | 0.046473005 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T018258 | AT3G26560 (4.00E-109) | ATP-dependent RNA helicase, putative |
| CRO_T021464 | AT3G06530 (8.00E-175) | ARM repeat superfamily protein |
| CRO_T025080 | AT2G22230 (7.00E-41) | Thioesterase superfamily protein |
| CRO_T031941 | AT5G64420 (0) | DNA polymerase V family |
| CRO_T032357 | - | - |
| CRO_T032388 | AT5G16660 (3.00E-35) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000244 | beta-tubulin binding protein tag post-chaperonin tubulin folding pathway microtubule cytoskeleton organization protein sumoylation tubulin complex assembly chromosome organization regulation of translational initiation formation of translation preinitiation complex GTPase activator activity ribosome binding Cell cycle cytosol eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex chromosome eukaryotic 43S preinitiation complex positive regulation of GTPase activity microtubule RNA transport translation initiation factor activity embryo development ending in seed dormancy | details |
| TreatCFM000355 | response to far red light heparan sulfate proteoglycan biosynthetic process positive regulation of biological process red or far-red light signaling pathway glycosaminoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity core promoter sequence-specific DNA binding glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity transcription from RNA polymerase II promoter transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding poly(A) RNA binding Spliceosome RNA processing Transcription_related, Transcription factor: FAR1 ATP-dependent RNA helicase activity | details |
| TreatCFM000728 | proteasome regulatory particle, lid subcomplex regulation of protein catabolic process phospholipid transport COPII vesicle coat enzyme regulator activity regulation of catalytic activity ER to Golgi vesicle-mediated transport ubiquitin-dependent protein catabolic process mRNA surveillance pathway Proteasome intracellular protein transport | details |
| TreatCFM001151 | positive regulation of GTPase activity chromosome organization tubulin complex assembly post-chaperonin tubulin folding pathway regulation of ARF protein signal transduction Cell cycle microtubule cytoskeleton organization ARF guanyl-nucleotide exchange factor activity beta-tubulin binding GTPase activator activity embryo development ending in seed dormancy chromosome microtubule | details |
| TreatCFM001533 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process Transcription_related, Transcription factor: CAMTA sphingolipid biosynthesis (plants) | details |
| TreatCFM001738 | Base excision repair sepal formation regulation of root meristem growth leaf formation leaf shaping regulation of histone methylation carpel development stamen development leaf vascular tissue pattern formation meristem structural organization DNA-3-methyladenine glycosylase activity regulation of flower development base-excision repair peptidyl-prolyl cis-trans isomerase activity histone binding chromatin binding protein peptidyl-prolyl isomerization | details |
| TreatCFM001806 | rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II L-cysteine biosynthesis I seleno-amino acid biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) checkpoint clamp complex Cell cycle - yeast mitochondrial translational elongation transmembrane transport oxidative photosynthetic carbon pathway DNA damage checkpoint sodium ion transport hydroxypyruvate reductase activity hydroxyphenylpyruvate reductase activity glyoxylate reductase (NADP) activity seed development rRNA processing damaged DNA binding translation elongation factor activity DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |