TreatCFM000355's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to far red light | 0.005395568 | GO:0010218 |
| heparan sulfate proteoglycan biosynthetic process | 0.005395568 | GO:0015012 |
| positive regulation of biological process | 0.005395568 | GO:0048518 |
| red or far-red light signaling pathway | 0.005395568 | GO:0010017 |
| glycosaminoglycan biosynthetic process | 0.005395568 | GO:0006024 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.005849767 | cazy family |
| glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.013542933 | GO:0001888 |
| core promoter sequence-specific DNA binding | 0.015039922 | GO:0001046 |
| glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.015039922 | GO:0050508 |
| transcription from RNA polymerase II promoter | 0.015396557 | GO:0006366 |
| transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 0.019165985 | GO:0001228 |
| poly(A) RNA binding | 0.021635096 | GO:0044822 |
| Spliceosome | 0.029426413 | KEGG pathway |
| RNA processing | 0.030174052 | GO:0006396 |
| Transcription_related, Transcription factor: FAR1 | 0.037821766 | TF family |
| ATP-dependent RNA helicase activity | 0.04719061 | GO:0004004 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002206 | AT3G55830 (2.00E-104) | EPC1|ECTOPICALLY PARTING CELLS |
| CRO_T007939 | AT2G32250 (5.00E-22) | FRS2|FAR1-related sequence 2 |
| CRO_T012456 | AT4G26410 (3.00E-54) | Uncharacterised conserved protein UCP022280 |
| CRO_T018258 | AT3G26560 (4.00E-109) | ATP-dependent RNA helicase, putative |
| CRO_T019901 | - | - |
| CRO_T032388 | AT5G16660 (3.00E-35) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000244 | beta-tubulin binding protein tag post-chaperonin tubulin folding pathway microtubule cytoskeleton organization protein sumoylation tubulin complex assembly chromosome organization regulation of translational initiation formation of translation preinitiation complex GTPase activator activity ribosome binding Cell cycle cytosol eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex chromosome eukaryotic 43S preinitiation complex positive regulation of GTPase activity microtubule RNA transport translation initiation factor activity embryo development ending in seed dormancy | details |
| TreatCFM000668 | mitochondrial translational elongation positive regulation of transcription from RNA polymerase I promoter t-UTP complex fatty acid elongation -- saturated L-cysteine biosynthesis I seleno-amino acid biosynthesis octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) 90S preribosome palmitate biosynthesis II (bacteria and plants) maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA biosynthetic process hydro-lyase activity RNA processing snoRNA binding DNA-directed DNA polymerase activity poly(A) RNA binding fatty acid biosynthetic process cytoplasm translation elongation factor activity Fatty acid metabolism Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM000728 | proteasome regulatory particle, lid subcomplex regulation of protein catabolic process phospholipid transport COPII vesicle coat enzyme regulator activity regulation of catalytic activity ER to Golgi vesicle-mediated transport ubiquitin-dependent protein catabolic process mRNA surveillance pathway Proteasome intracellular protein transport | details |
| TreatCFM001134 | RNA catabolic process specification of floral organ identity sodium ion transport RNA helicase activity Ubiquitin_Proteasome_system, E3 adaptor: SKP1 Plant-pathogen interaction RNA degradation nucleoplasm ubiquitin-dependent protein catabolic process | details |
| TreatCFM001151 | positive regulation of GTPase activity chromosome organization tubulin complex assembly post-chaperonin tubulin folding pathway regulation of ARF protein signal transduction Cell cycle microtubule cytoskeleton organization ARF guanyl-nucleotide exchange factor activity beta-tubulin binding GTPase activator activity embryo development ending in seed dormancy chromosome microtubule | details |
| TreatCFM001372 | Glucagon signaling pathway DNA endoreduplication glycosaminoglycan biosynthetic process trichome branching heparan sulfate proteoglycan biosynthetic process Cell cycle formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Transcription_related, Transcription factor: MYB-related Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TreatCFM001533 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process Transcription_related, Transcription factor: CAMTA sphingolipid biosynthesis (plants) | details |
| TreatCFM001541 | ligase activity Glucagon signaling pathway Toll and Imd signaling pathway transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity postreplication repair heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process protein K63-linked ubiquitination Cell cycle glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding Ubiquitin mediated proteolysis | details |
| TreatCFM001738 | Base excision repair sepal formation regulation of root meristem growth leaf formation leaf shaping regulation of histone methylation carpel development stamen development leaf vascular tissue pattern formation meristem structural organization DNA-3-methyladenine glycosylase activity regulation of flower development base-excision repair peptidyl-prolyl cis-trans isomerase activity histone binding chromatin binding protein peptidyl-prolyl isomerization | details |
| TreatCFM001751 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT histone ubiquitination DNA endoreduplication innate immune response chloride transport glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process protein monoubiquitination actin filament depolymerization trichome branching reproductive structure development glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity voltage-gated chloride channel activity Regulation of actin cytoskeleton regulation of anion transmembrane transport post-embryonic development Transcription_related, Transcription factor: C3H ion transmembrane transport Ubiquitin mediated proteolysis actin cytoskeleton single-organism cellular process protein ubiquitination involved in ubiquitin-dependent protein catabolic process actin binding metal ion binding | details |
Expression profiles
 Show details about module gene expression profiling |