TreatCFM000817's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| rRNA modification | 0.003102103 | GO:0000154 |
| snoRNA binding | 0.003924457 | GO:0030515 |
| response to hormone | 0.006814349 | GO:0009725 |
| box C/D snoRNP complex | 0.007960653 | GO:0031428 |
| AMPK signaling pathway | 0.014246921 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.026181577 | KEGG pathway |
| small-subunit processome | 0.032831092 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000922 | AT1G01490 (1.00E-13) | Heavy metal transport/detoxification superfamily protein |
| CRO_T013984 | AT3G05060 (1.00E-104) | NOP56-like pre RNA processing ribonucleoprotein |
| CRO_T019644 | AT4G30850 (8.00E-85) | HHP2|heptahelical transmembrane protein2 |
| CRO_T021579 | AT3G12770 (4.00E-78) | MEF22|mitochondrial editing factor 22 |
| CRO_T029807 | AT5G43470 (1.00E-59) | HRT|HYPERSENSITIVE RESPONSE TO TCV; RCY1|RESISTANT TO CMV(Y) 1; RPP8|RECOGNITION OF PERONOSPORA PARASITICA 8 |
| CRO_T030245 | AT1G62390 (7.00E-33) | CLMP1|CLUMPED CHLOROPLASTS 1; Phox2|Phox2 |
| CRO_T031069 | AT3G24740 (4.00E-77) | Protein of unknown function (DUF1644) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000239 | protein dephosphorylation chloroplast fission RNA biosynthetic process extrinsic component of plastid membrane plastid part Transcription_related, Transcription factor: NF-YA Transcription_related, Transcription regulator: LIM microtubule cytoskeleton cytoskeletal part chloroplast outer membrane triacylglycerol degradation mRNA surveillance pathway | details |
| TreatCFM001535 | integral component of mitochondrial outer membrane Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: G2-like Transcription_related, Transcription factor: Trihelix | details |
| TreatCFM001561 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I malate transmembrane transport malate transmembrane transporter activity histone acetyltransferase activity histone acetylation Glycerophospholipid metabolism lyase activity plant-type vacuole membrane lipid metabolic process | details |
| TreatCFM001688 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) histone acetylation Glycerophospholipid metabolism histone acetyltransferase activity MAPK signaling pathway - plant | details |
Expression profiles
 Show details about module gene expression profiling |