TreatCFM001561's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| rRNA modification | 4.49E-06 | GO:0000154 |
| box C/D snoRNP complex | 8.37E-06 | GO:0031428 |
| snoRNA binding | 5.68E-05 | GO:0030515 |
| small-subunit processome | 0.000254806 | GO:0032040 |
| Ribosome biogenesis in eukaryotes | 0.000285452 | KEGG pathway |
| phosphatidylethanolamine biosynthesis I | 0.000886394 | plantCyc |
| malate transmembrane transport | 0.011126695 | GO:0071423 |
| malate transmembrane transporter activity | 0.012131936 | GO:0015140 |
| histone acetyltransferase activity | 0.012131936 | GO:0004402 |
| histone acetylation | 0.012804986 | GO:0016573 |
| Glycerophospholipid metabolism | 0.014835411 | KEGG pathway |
| lyase activity | 0.023204824 | GO:0016829 |
| plant-type vacuole membrane | 0.030939765 | GO:0009705 |
| lipid metabolic process | 0.038754009 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002476 | AT5G64610 (8.00E-43) | HAM1|histone acetyltransferase of the MYST family 1 |
| CRO_T003377 | AT3G05060 (3.00E-106) | NOP56-like pre RNA processing ribonucleoprotein |
| CRO_T006290 | AT1G25480 (7.00E-153) | Aluminium activated malate transporter family protein |
| CRO_T013984 | AT3G05060 (1.00E-104) | NOP56-like pre RNA processing ribonucleoprotein |
| CRO_T020026 | AT2G39170 (2.00E-41) | unknown protein |
| CRO_T024862 | AT4G25970 (5.00E-60) | PSD3|phosphatidylserine decarboxylase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000817 | rRNA modification snoRNA binding response to hormone box C/D snoRNP complex AMPK signaling pathway Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM001159 | 5-aminoimidazole ribonucleotide biosynthesis I cytoplasmic ribonucleoprotein granule phosphoribosylformylglycinamidine cyclo-ligase activity AMPK signaling pathway protein secretion malate transmembrane transport chromosome segregation vesicle docking involved in exocytosis 'de novo' IMP biosynthetic process regulation of gene expression | details |
| TreatCFM001476 | phosphatidylinositol metabolic process rRNA modification 3-phosphoinositide biosynthesis sesaminol glucoside biosynthesis box C/D snoRNP complex mitochondrial large ribosomal subunit small-subunit processome | details |
| TreatCFM001518 | Cytochrome_P450, Cytochrome P450: CYP81K Transcription_related, Transcription factor: STAT UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) Cytochrome_P450, Cytochrome P450: CYP81D D-galactose degradation III stachyose degradation UDP-sugars interconversion sesamin biosynthesis Galactose metabolism box C/D snoRNP complex indole glucosinolate metabolic process defense response to other organism rRNA modification galactose metabolic process Ribosome biogenesis in eukaryotes organic substance metabolic process cellular metabolic process UDP-glucose 4-epimerase activity signal transducer activity snoRNA binding secondary metabolite biosynthetic process signal transduction | details |
| TreatCFM001571 | rRNA modification box C/D snoRNP complex snoRNA binding Ribosome biogenesis in eukaryotes small-subunit processome UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) D-galactose degradation III UDP-glucose 4-epimerase activity Galactose metabolism stachyose degradation UDP-sugars interconversion galactose metabolic process organic substance metabolic process cellular metabolic process transmembrane transporter activity Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001613 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family ErbB signaling pathway trans, trans-farnesyl diphosphate biosynthesis methylerythritol phosphate pathway I methylerythritol phosphate pathway II mevalonate pathway I cytosol nuclear-transcribed mRNA catabolic process peptidyl-diphthamide biosynthetic process from peptidyl-histidine positive regulation of ubiquitin-protein transferase activity regulation of mitotic cell cycle ubiquitin-like protein binding cullin family protein binding diphthine synthase activity SUMO activating enzyme activity protein neddylation histone acetyltransferase activity ubiquitin conjugating enzyme binding large ribosomal subunit rRNA binding lipase activity protein sumoylation Ubiquitin mediated proteolysis histone acetylation ribosomal large subunit assembly cytoplasmic translation | details |
| TreatCFM001688 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) histone acetylation Glycerophospholipid metabolism histone acetyltransferase activity MAPK signaling pathway - plant | details |
| TreatCFM001689 | CURI complex UTP-C complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc diphthine synthase activity peptidyl-diphthamide biosynthetic process from peptidyl-histidine tRNA export from nucleus Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: SET histone acetylation histone acetyltransferase activity MAPK signaling pathway - plant Ribosome biogenesis in eukaryotes small-subunit processome rRNA processing | details |
| TreatCFM001872 | spermine and spermidine degradation III hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc mRNA cap binding complex mRNA (guanine-N7-)-methyltransferase activity ribonuclease P activity trehalose-phosphatase activity RNA (guanine-N7)-methylation 7-methylguanosine mRNA capping protein lipoylation malate transmembrane transport malate transmembrane transporter activity trehalose biosynthetic process tRNA processing Transcription_related, Transcription factor: bHLH RNA phosphodiester bond hydrolysis, endonucleolytic | details |
Expression profiles
 Show details about module gene expression profiling |