TreatCFM000824's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA surveillance pathway | 0.014804758 | KEGG pathway |
| protein phosphatase type 2A complex | 0.01624335 | GO:0000159 |
| regulation of protein phosphatase type 2A activity | 0.02119061 | GO:0034047 |
| cytochrome b6f complex assembly | 0.02119061 | GO:0010190 |
| protein phosphatase type 2A regulator activity | 0.024274631 | GO:0008601 |
| isomerase activity | 0.036347437 | GO:0016853 |
| intracellular part | 0.043407503 | GO:0044424 |
| root development | 0.047427143 | GO:0048364 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003533 | AT5G01470 (2.00E-94) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T005341 | AT1G59840 (9.00E-45) | CCB4|cofactor assembly of complex C |
| CRO_T006314 | AT2G27230 (8.00E-64) | LHW|LONESOME HIGHWAY |
| CRO_T008709 | AT1G17720 (1.00E-04) | ATB BETA|Protein phosphatase 2A, regulatory subunit PR55 |
| CRO_T016484 | AT1G55610 (0) | BRL1|BRI1 like |
| CRO_T016752 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000326 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination cytochrome b6f complex assembly acetaldehyde biosynthesis I pyruvate fermentation to ethanol II phosphatidylcholine phospholipase C activity Inositol phosphate metabolism translational initiation response to stress | details |
| TreatCFM001505 | NF-kappa B signaling pathway cytochrome b6f complex assembly non-membrane spanning protein tyrosine kinase activity polygalacturonase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII peptidyl-tyrosine phosphorylation | details |
| TreatCFM001516 | Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase translational frameshifting positive regulation of translational termination positive regulation of translational elongation carbamoyl-phosphate synthase complex Pyrimidine metabolism cytochrome b6f complex assembly urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase 'de novo' pyrimidine nucleobase biosynthetic process protein serine/threonine/tyrosine kinase activity carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity arginine biosynthetic process protein phosphorylation glutamine metabolic process protein serine/threonine kinase activity ribosome binding translation elongation factor activity translational initiation translation initiation factor activity | details |
| TreatCFM001538 | cytochrome b6f complex assembly microfibril fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Basal transcription factors cellular metabolic process integral component of mitochondrial outer membrane thylakoid membrane part | details |
| TreatCFM001587 | carbamoyl-phosphate synthase complex glycerol-3-phosphate shuttle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle glycerol-3-phosphate catabolic process translational frameshifting positive regulation of translational termination cytochrome b6f complex assembly positive regulation of translational elongation L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase glycerol-3-phosphate dehydrogenase complex 'de novo' pyrimidine nucleobase biosynthetic process arginine biosynthetic process glutamine metabolic process Glycerophospholipid metabolism Pyrimidine metabolism carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity glycerol-3-phosphate dehydrogenase [NAD+] activity translational initiation ribosome binding translation elongation factor activity | details |
| TreatCFM001662 | metalloaminopeptidase activity peptide binding Arachidonic acid metabolism peptide catabolic process shoot system morphogenesis protein retention in Golgi apparatus proteolysis protein phosphatase type 2A regulator activity regulation of protein phosphatase type 2A activity meristem structural organization cell growth retrograde vesicle-mediated transport, Golgi to ER Golgi organization Golgi transport complex protein phosphatase type 2A complex cytosol mRNA surveillance pathway serine-type endopeptidase activity embryo development ending in seed dormancy | details |
| TreatCFM001857 | D-myo-inositol-5-phosphate metabolism pyruvate decarboxylation to acetyl CoA ATPase binding vacuolar proton-transporting V-type ATPase, V0 domain plant-type vacuole regulation of circadian rhythm vacuolar proton-transporting V-type ATPase complex assembly cytochrome b6f complex assembly vacuolar acidification protein tyrosine phosphatase activity Transcription_related, Transcription factor: MYB proton-transporting ATPase activity, rotational mechanism spliceosomal complex transferase activity, transferring acyl groups peptidyl-tyrosine dephosphorylation vegetative to reproductive phase transition of meristem ATP hydrolysis coupled proton transport positive regulation of transcription, DNA-templated ATP synthesis coupled proton transport mRNA splicing, via spliceosome | details |
| TreatCFM001997 | mRNA surveillance pathway jasmonic acid biosynthesis calcium:proton antiporter activity protein phosphatase type 2A regulator activity protein phosphatase type 2A complex cell plate phragmoplast regulation of protein phosphatase type 2A activity calcium ion transmembrane transport Endocytosis pollen development | details |
| TreatCFM001998 | jasmonic acid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc calcium:proton antiporter activity mRNA surveillance pathway protein phosphatase type 2A regulator activity calcium ion transmembrane transport regulation of protein phosphatase type 2A activity Endocytosis acetylglucosaminyltransferase activity pollen development protein phosphatase type 2A complex cell plate phragmoplast peptidase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII integral component of membrane | details |
| TreatCFM002014 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase regulation of transcription from RNA polymerase II promoter in response to salt stress cytochrome b6f complex assembly Wnt signaling pathway regulation of cell shape protein serine/threonine kinase activity Endocytosis peptidyl-serine phosphorylation protein serine/threonine phosphatase activity protein dephosphorylation cytoplasm | details |
| TreatCFM002123 | Hippo signaling pathway -fly Ubiquitin mediated proteolysis Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase Transcription_related, Transcription factor: G2-like | details |
Expression profiles
 Show details about module gene expression profiling |