TreatCFM001587's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| carbamoyl-phosphate synthase complex | 0.005213151 | GO:0005951 |
| glycerol-3-phosphate shuttle | 0.006433793 | plantCyc |
| L-arginine biosynthesis I (via L-ornithine) | 0.006433793 | plantCyc |
| UMP biosynthesis I | 0.006433793 | plantCyc |
| urea cycle | 0.006433793 | plantCyc |
| glycerol-3-phosphate catabolic process | 0.007328471 | GO:0046168 |
| translational frameshifting | 0.007328471 | GO:0006452 |
| positive regulation of translational termination | 0.007328471 | GO:0045905 |
| cytochrome b6f complex assembly | 0.007328471 | GO:0010190 |
| positive regulation of translational elongation | 0.007328471 | GO:0045901 |
| L-arginine biosynthesis II (acetyl cycle) | 0.007502764 | plantCyc |
| ornithine-citrulline shuttle | 0.007502764 | plantCyc |
| L-glutamine degradation I | 0.007807269 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase | 0.008502467 | kinase family |
| glycerol-3-phosphate dehydrogenase complex | 0.009119644 | GO:0009331 |
| 'de novo' pyrimidine nucleobase biosynthetic process | 0.011511914 | GO:0006207 |
| arginine biosynthetic process | 0.014643951 | GO:0006526 |
| glutamine metabolic process | 0.014643951 | GO:0006541 |
| Glycerophospholipid metabolism | 0.014835411 | KEGG pathway |
| Pyrimidine metabolism | 0.014835411 | KEGG pathway |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 0.015576165 | GO:0004088 |
| glycerol-3-phosphate dehydrogenase [NAD+] activity | 0.015576165 | GO:0004367 |
| translational initiation | 0.037251144 | GO:0006413 |
| ribosome binding | 0.043206426 | GO:0043022 |
| translation elongation factor activity | 0.045333241 | GO:0003746 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005341 | AT1G59840 (9.00E-45) | CCB4|cofactor assembly of complex C |
| CRO_T015106 | AT1G24909 (7.00E-11) | Glutamine amidotransferase type 1 family protein |
| CRO_T019982 | AT1G13950 (1.00E-78) | ATELF5A-1|EUKARYOTIC ELONGATION FACTOR 5A-1; EIF5A|EUKARYOTIC ELONGATION FACTOR 5A |
| CRO_T024159 | - | - |
| CRO_T024903 | AT1G26150 (1.00E-180) | AtPERK10|proline-rich extensin-like receptor kinase 10 |
| CRO_T025533 | AT2G41540 (0) | GPDHC1|6-phosphogluconate dehydrogenase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000148 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc positive regulation of translational elongation translational frameshifting positive regulation of translational termination Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Cysteine and methionine metabolism 1-aminocyclopropane-1-carboxylate oxidase activity ethylene biosynthesis I (plants) phosphatidylcholine acyl editing phospholipases lipase activity translational initiation ribosome binding triacylglycerol degradation translation elongation factor activity | details |
| TreatCFM000194 | carbamoyl-phosphate synthase complex L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I positive regulation of translational termination positive regulation of translational elongation translational frameshifting ion binding glucuronosyltransferase activity carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity histidine phosphotransfer kinase activity xylem development xylan biosynthetic process cytokinin-activated signaling pathway protein histidine kinase binding 'de novo' pyrimidine nucleobase biosynthetic process arginine biosynthetic process plant-type secondary cell wall biogenesis glutamine metabolic process Pyrimidine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc ribosome binding Transcription_related, Transcription factor: ERF translation elongation factor activity phosphorelay signal transduction system translational initiation Plant hormone signal transduction | details |
| TreatCFM000326 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination cytochrome b6f complex assembly acetaldehyde biosynthesis I pyruvate fermentation to ethanol II phosphatidylcholine phospholipase C activity Inositol phosphate metabolism translational initiation response to stress | details |
| TreatCFM000338 | Transcription_related, Transcription factor: DBB positive regulation of translational elongation positive regulation of translational termination translational frameshifting ethylene biosynthesis I (plants) L-glutamate degradation IV glutamate metabolic process pollen sperm cell differentiation photomorphogenesis glutamate decarboxylase activity transcription factor activity, transcription factor binding 1-aminocyclopropane-1-carboxylate oxidase activity glycerol-3-phosphate 2-O-acyltransferase activity Butanoate metabolism Cysteine and methionine metabolism Glycerolipid metabolism Plant-pathogen interaction ribosome binding translation elongation factor activity metal ion binding translational initiation | details |
| TreatCFM000643 | translational frameshifting positive regulation of translational termination positive regulation of translational elongation Transcription_related, Transcription factor: DBB abscisic acid biosynthesis pollen sperm cell differentiation oxalate metabolic process photomorphogenesis glycerol-3-phosphate 2-O-acyltransferase activity transcription factor activity, transcription factor binding oxalate decarboxylase activity very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II ribosome binding | details |
| TreatCFM000783 | positive regulation of translational termination positive regulation of translational elongation translational frameshifting adenine and adenosine salvage II Other glycan degradation mannose metabolic process protein deglycosylation nucleoside metabolic process very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: bHLH | details |
| TreatCFM000784 | N-acylethanolamine metabolic process positive regulation of translational elongation positive regulation of translational termination translational frameshifting acetaldehyde biosynthesis I pyruvate fermentation to ethanol II metabolic process phosphatidylcholine phospholipase C activity N-(long-chain-acyl)ethanolamine deacylase activity Cytochrome_P450, Cytochrome P450: CYP71B Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Inositol phosphate metabolism | details |
| TreatCFM000824 | mRNA surveillance pathway protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity cytochrome b6f complex assembly protein phosphatase type 2A regulator activity isomerase activity intracellular part root development | details |
| TreatCFM000861 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination abscisic acid biosynthesis cellulose biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Purine metabolism microtubule-based movement cellulose biosynthetic process translational initiation | details |
| TreatCFM001147 | carbamoyl-phosphate synthase complex chloroplast stroma L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I cytokinin metabolic process 'de novo' pyrimidine nucleobase biosynthetic process plastid organization translational termination peptidyl-tyrosine dephosphorylation glutamine metabolic process arginine biosynthetic process carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity cytokinin dehydrogenase activity translation release factor activity, codon specific Inositol phosphate metabolism Pyrimidine metabolism Zeatin biosynthesis ribosome binding protein tyrosine phosphatase activity oxidoreductase activity, acting on CH-OH group of donors RNA processing | details |
| TreatCFM001171 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination cortical microtubule preprophase band phragmoplast very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid elongation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: Orphans pectin catabolic process phosphorelay signal transduction system cell wall modification translational initiation fatty acid biosynthetic process translation elongation factor activity transferase activity, transferring acyl groups other than amino-acyl groups pectinesterase activity aspartyl esterase activity ribosome binding | details |
| TreatCFM001212 | glucokinase activity mannokinase activity glucose binding cellular glucose homeostasis glucose 6-phosphate metabolic process fructokinase activity carbohydrate phosphorylation glycolytic process Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity Carbon metabolism carbamoyl-phosphate synthase complex urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I 'de novo' pyrimidine nucleobase biosynthetic process L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I arginine biosynthetic process glutamine metabolic process Pyrimidine metabolism cytosol | details |
| TreatCFM001217 | Cytochrome_P450, Cytochrome P450: CYP711 positive regulation of translational elongation translational frameshifting positive regulation of translational termination tRNA re-export from nucleus regulation of meristem structural organization meristem initiation secondary shoot formation pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion nuclear matrix nucleobase-containing compound transmembrane transporter activity flower development nuclear pore auxin polar transport cell wall modification negative regulation of catalytic activity pectin catabolic process translational initiation tRNA binding aromatase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Pentose and glucuronate interconversions Purine metabolism translation elongation factor activity ribosome binding Ran GTPase binding aspartyl esterase activity pectinesterase inhibitor activity integral component of membrane pectinesterase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TreatCFM001228 | positive regulation of translational elongation positive regulation of translational termination translational frameshifting Insulin signaling pathway exocyst RNA degradation exocytosis translational initiation ribosome binding nucleotidyltransferase activity translation elongation factor activity nucleotide binding translation initiation factor activity | details |
| TreatCFM001249 | positive regulation of translational termination translational frameshifting positive regulation of translational elongation NOD-like receptor signaling pathway ABC transporters Inositol phosphate metabolism cell morphogenesis oxidation-reduction process phosphatidylcholine phospholipase C activity Cytochrome_P450, Cytochrome P450: CYP71B Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: OTU glycerol ether metabolic process cellular response to oxidative stress sulfate assimilation | details |
| TreatCFM001251 | Ubiquitin_Proteasome_system, DUB: OTU glycerol-3-phosphate shuttle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle carbamoyl-phosphate synthase complex L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I positive regulation of translational elongation translational frameshifting positive regulation of translational termination pyridoxal phosphate biosynthetic process glycerol-3-phosphate catabolic process cell morphogenesis carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity ion binding glycerol-3-phosphate dehydrogenase [NAD+] activity pyridoxamine-phosphate oxidase activity 'de novo' pyrimidine nucleobase biosynthetic process glycerol-3-phosphate dehydrogenase complex glutamine metabolic process arginine biosynthetic process Glycerophospholipid metabolism Pyrimidine metabolism ribosome binding FMN binding translation elongation factor activity translational initiation | details |
| TreatCFM001259 | Protein_kinases_phosphatases, PPC:1.13.1: Leucine Rich Repeat Kinase VII positive regulation of translational termination positive regulation of translational elongation translational frameshifting pyridoxal phosphate biosynthetic process auxin homeostasis auxin efflux pyridoxamine-phosphate oxidase activity auxin efflux transmembrane transporter activity auxin polar transport ribosome binding translation elongation factor activity FMN binding auxin-activated signaling pathway translational initiation | details |
| TreatCFM001344 | Protein_kinases_phosphatases, PPC:1.13.1: Leucine Rich Repeat Kinase VII translational frameshifting positive regulation of translational termination positive regulation of translational elongation pyridoxal phosphate biosynthetic process Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription factor: M-type pyridoxamine-phosphate oxidase activity FMN binding translation elongation factor activity ribosome binding | details |
| TreatCFM001347 | nuclear ubiquitin ligase complex Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) positive regulation of translational elongation organ senescence detection of nutrient vegetative phase change translational frameshifting positive regulation of translational termination developmental process involved in reproduction sugar mediated signaling pathway primary root development Apelin signaling pathway RNA degradation abscisic acid-activated signaling pathway translational initiation | details |
| TreatCFM001505 | NF-kappa B signaling pathway cytochrome b6f complex assembly non-membrane spanning protein tyrosine kinase activity polygalacturonase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII peptidyl-tyrosine phosphorylation | details |
| TreatCFM001516 | Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase translational frameshifting positive regulation of translational termination positive regulation of translational elongation carbamoyl-phosphate synthase complex Pyrimidine metabolism cytochrome b6f complex assembly urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase 'de novo' pyrimidine nucleobase biosynthetic process protein serine/threonine/tyrosine kinase activity carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity arginine biosynthetic process protein phosphorylation glutamine metabolic process protein serine/threonine kinase activity ribosome binding translation elongation factor activity translational initiation translation initiation factor activity | details |
| TreatCFM001538 | cytochrome b6f complex assembly microfibril fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Basal transcription factors cellular metabolic process integral component of mitochondrial outer membrane thylakoid membrane part | details |
| TreatCFM001568 | Thyroid hormone signaling pathway positive regulation of translational elongation positive regulation of translational termination translational frameshifting formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-GATA cellulose biosynthesis phosphatidylcholine acyl editing phospholipases triacylglycerol degradation mediator complex translation elongation factor activity cellulose synthase (UDP-forming) activity ribosome binding cellulose biosynthetic process translational initiation | details |
| TreatCFM001572 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family carbamoyl-phosphate synthase complex glucokinase activity glucose binding mannokinase activity carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I fructokinase activity glucose 6-phosphate metabolic process cellular glucose homeostasis glutamine metabolic process 'de novo' pyrimidine nucleobase biosynthetic process arginine biosynthetic process regulation of cell shape Wnt signaling pathway carbohydrate phosphorylation Endocytosis Pyrimidine metabolism glycolytic process peptidyl-serine phosphorylation | details |
| TreatCFM001701 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SWI/SNF-BAF60b Fructose and mannose metabolism Galactose metabolism mannan catabolic process translational initiation ribosome binding mannan endo-1,4-beta-mannosidase activity translation elongation factor activity protein dephosphorylation protein serine/threonine phosphatase activity | details |
| TreatCFM001857 | D-myo-inositol-5-phosphate metabolism pyruvate decarboxylation to acetyl CoA ATPase binding vacuolar proton-transporting V-type ATPase, V0 domain plant-type vacuole regulation of circadian rhythm vacuolar proton-transporting V-type ATPase complex assembly cytochrome b6f complex assembly vacuolar acidification protein tyrosine phosphatase activity Transcription_related, Transcription factor: MYB proton-transporting ATPase activity, rotational mechanism spliceosomal complex transferase activity, transferring acyl groups peptidyl-tyrosine dephosphorylation vegetative to reproductive phase transition of meristem ATP hydrolysis coupled proton transport positive regulation of transcription, DNA-templated ATP synthesis coupled proton transport mRNA splicing, via spliceosome | details |
| TreatCFM001928 | Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase complex Pyrimidine metabolism L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I glutamine metabolic process arginine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity RNA secondary structure unwinding | details |
| TreatCFM002014 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase regulation of transcription from RNA polymerase II promoter in response to salt stress cytochrome b6f complex assembly Wnt signaling pathway regulation of cell shape protein serine/threonine kinase activity Endocytosis peptidyl-serine phosphorylation protein serine/threonine phosphatase activity protein dephosphorylation cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |