TreatCFM000831's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| post-embryonic root development | 0.001595745 | GO:0048528 |
| MAPK signaling pathway - yeast | 0.002657217 | KEGG pathway |
| protein domain specific binding | 0.012667941 | GO:0019904 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014660 | - | - |
| CRO_T017716 | - | - |
| CRO_T023236 | AT1G78220 (3.00E-67) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
| CRO_T024242 | - | - |
| CRO_T027855 | - | - |
| CRO_T033006 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000131 | post-embryonic root development U5 snRNA 3'-end processing exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent tRNA catabolic process U1 snRNA 3'-end processing nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' U4 snRNA 3'-end processing MAPK signaling pathway - yeast AU-rich element binding protein domain specific binding cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) RNA degradation Transcription_related, Transcription factor: HB | details |
| TreatCFM000830 | MAPK signaling pathway - yeast Transcriptional misregulation in cancers positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity Golgi vesicle budding post-embryonic root development phospholipid translocation positive regulation of transcription from RNA polymerase II promoter protein domain specific binding phospholipid-translocating ATPase activity cyclin-dependent protein serine/threonine kinase regulator activity cyclin-dependent protein kinase holoenzyme complex | details |
| TreatCFM001321 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase activity transferase activity, transferring acyl groups ligase activity ubiquitin protein ligase binding | details |
| TreatCFM001612 | post-embryonic root development Ubiquitin_Proteasome_system, E1: ThiF MAPK signaling pathway MAPK signaling pathway - yeast protein neddylation removal of superoxide radicals oxalate metabolic process NEDD8 activating enzyme activity acid-amino acid ligase activity cellular protein metabolic process oxalate decarboxylase activity protein domain specific binding superoxide dismutase activity nutrient reservoir activity manganese ion binding Ubiquitin mediated proteolysis | details |
| TreatCFM001682 | starch biosynthesis binding glucose-1-phosphate adenylyltransferase activity RNA polymerase II transcription cofactor activity starch biosynthetic process glycogen biosynthetic process mediator complex regulation of transcription from RNA polymerase II promoter Starch and sucrose metabolism | details |
| TreatCFM001861 | post-embryonic root development ether hydrolase activity Adherens junction xyloglucan biosynthesis PPAR signaling pathway MAPK signaling pathway - yeast protein domain specific binding formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC | details |
Expression profiles
 Show details about module gene expression profiling |