TreatCFM001612's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| post-embryonic root development | 0.009121801 | GO:0048528 |
| Ubiquitin_Proteasome_system, E1: ThiF | 0.011154708 | ubs family |
| MAPK signaling pathway | 0.011359262 | KEGG pathway |
| MAPK signaling pathway - yeast | 0.011359262 | KEGG pathway |
| protein neddylation | 0.011390126 | GO:0045116 |
| removal of superoxide radicals | 0.011390126 | GO:0019430 |
| oxalate metabolic process | 0.011390126 | GO:0033609 |
| NEDD8 activating enzyme activity | 0.01211569 | GO:0019781 |
| acid-amino acid ligase activity | 0.01211569 | GO:0016881 |
| cellular protein metabolic process | 0.016989664 | GO:0044267 |
| oxalate decarboxylase activity | 0.018155819 | GO:0046564 |
| protein domain specific binding | 0.018155819 | GO:0019904 |
| superoxide dismutase activity | 0.018155819 | GO:0004784 |
| nutrient reservoir activity | 0.019157681 | GO:0045735 |
| manganese ion binding | 0.023318377 | GO:0030145 |
| Ubiquitin mediated proteolysis | 0.034986638 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002013 | AT3G54085 (4.00E-14) | Yos1-like protein |
| CRO_T011328 | AT5G42940 (9.00E-51) | RING/U-box superfamily protein |
| CRO_T019056 | - | - |
| CRO_T020780 | AT5G63870 (9.00E-48) | PP7|serine/threonine phosphatase 7 |
| CRO_T023236 | AT1G78220 (3.00E-67) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
| CRO_T031782 | AT5G48335 (2.00E-11) | unknown protein |
| CRO_T032200 | AT1G18980 (4.00E-31) | RmlC-like cupins superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000131 | post-embryonic root development U5 snRNA 3'-end processing exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent tRNA catabolic process U1 snRNA 3'-end processing nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' U4 snRNA 3'-end processing MAPK signaling pathway - yeast AU-rich element binding protein domain specific binding cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) RNA degradation Transcription_related, Transcription factor: HB | details |
| TreatCFM000830 | MAPK signaling pathway - yeast Transcriptional misregulation in cancers positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity Golgi vesicle budding post-embryonic root development phospholipid translocation positive regulation of transcription from RNA polymerase II promoter protein domain specific binding phospholipid-translocating ATPase activity cyclin-dependent protein serine/threonine kinase regulator activity cyclin-dependent protein kinase holoenzyme complex | details |
| TreatCFM000831 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TreatCFM001188 | Cell cycle - yeast MAPK signaling pathway mitotic chromosome condensation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc microtubule cytoskeleton cytoskeletal part protein disulfide isomerase activity cell regulation of cellular process cell redox homeostasis cell division polysaccharide binding | details |
| TreatCFM001861 | post-embryonic root development ether hydrolase activity Adherens junction xyloglucan biosynthesis PPAR signaling pathway MAPK signaling pathway - yeast protein domain specific binding formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM002068 | homogalacturonan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polygalacturonate 4-alpha-galacturonosyltransferase activity Antigen processing and presentation MAPK signaling pathway NF-kappa B signaling pathway cell wall organization Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002129 | cell cell redox homeostasis microtubule cytoskeleton cytoskeletal part thioredoxin pathway MAPK signaling pathway Stilbenoid, diarylheptanoid and gingerol biosynthesis vindoline and vinblastine biosynthesis 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity protein disulfide isomerase activity myricetin 3'-O-methyltransferase activity aromatic compound biosynthetic process alkaloid biosynthetic process regulation of cellular process protein disulfide oxidoreductase activity protein homodimerization activity electron carrier activity | details |
| TreatCFM002164 | methylated histone binding Cell cycle - Caulobacter MAPK signaling pathway peptidyl-lysine monomethylation response to reactive oxygen species regulation of gene expression protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET | details |
Expression profiles
 Show details about module gene expression profiling |