TreatCFM000907's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sucrose degradation III (sucrose invertase) | 0.002480253 | plantCyc |
| regulation of nitrogen utilization | 0.003009763 | GO:0006808 |
| regulation of fatty acid biosynthetic process | 0.003009763 | GO:0042304 |
| regulation of phosphorylation | 0.003009763 | GO:0042325 |
| acetylglutamate kinase regulator activity | 0.005213151 | GO:0010307 |
| anthocyanin-containing compound biosynthetic process | 0.005642055 | GO:0009718 |
| Fructose and mannose metabolism | 0.006014577 | KEGG pathway |
| Ubiquitin_Proteasome_system, DUB: OTU | 0.006014577 | ubs family |
| D-ribose metabolic process | 0.008122158 | GO:0006014 |
| ribokinase activity | 0.010418601 | GO:0004747 |
| fructokinase activity | 0.010418601 | GO:0008865 |
| carbohydrate phosphorylation | 0.015779088 | GO:0046835 |
| nucleotidyltransferase activity | 0.022103569 | GO:0016779 |
| regulation of catalytic activity | 0.02380149 | GO:0050790 |
| chloroplast thylakoid | 0.037930888 | GO:0009534 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000061 | AT1G06030 (2.00E-111) | pfkB-like carbohydrate kinase family protein |
| CRO_T003934 | AT1G63020 (0) | NRPD1A|nuclear RNA polymerase D1A; POL IVA|NUCLEAR RNA POLYMERASE D 1A; SMD2|SILENCING MOVEMENT DEFICIENT 2 |
| CRO_T016055 | AT4G01900 (8.00E-41) | GLB1|GLNB1 homolog |
| CRO_T021374 | AT5G24000 (1.00E-111) | Protein of unknown function (DUF819) |
| CRO_T028986 | - | - |
| CRO_T029169 | AT2G39320 (4.00E-13) | Cysteine proteinases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000165 | stachyose degradation multi-eIF complex eukaryotic translation initiation factor 2 complex Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc eukaryotic translation initiation factor 2B complex mannan catabolic process translation protein import into nucleus xylan catabolic process maturation of LSU-rRNA | details |
| TreatCFM001670 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase MAPK signaling pathway regulation of phosphorylation regulation of nitrogen utilization regulation of fatty acid biosynthetic process acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process photosystem II repair photosystem II assembly chloroplast thylakoid lumen N,N-dimethylaniline monooxygenase activity regulation of catalytic activity NADP binding | details |
| TreatCFM001742 | phosphatidylcholine metabolic process endosomal transport tetracyclic triterpenoid biosynthetic process endosome N-acylphosphatidylethanolamine-specific phospholipase D activity cycloartenol synthase activity phospholipase D activity phosphatidylcholine biosynthesis II phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV plant sterol biosynthesis II choline biosynthesis I choline biosynthesis III mangrove triterpenoid biosynthesis BLOC-1 complex lipid catabolic process phosphatidate metabolism, as a signaling molecule plant sterol biosynthesis root development phospholipases Glycerophospholipid metabolism Steroid biosynthesis Endocytosis S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM001756 | regulation of fatty acid biosynthetic process regulation of phosphorylation regulation of nitrogen utilization anthocyanin-containing compound biosynthetic process ajmaline and sarpagine biosynthesis acetylglutamate kinase regulator activity cellular protein metabolic process regulation of catalytic activity | details |
| TreatCFM001765 | positive regulation of superoxide dismutase activity peptide-methionine (R)-S-oxide reductase activity protein repair Ubiquitin_Proteasome_system, DUB: OTU transition metal ion binding zinc ion binding | details |
| TreatCFM001935 | L-citrulline degradation ornithine carbamoyltransferase activity acetylglutamate kinase regulator activity L-arginine biosynthesis I (via L-ornithine) urea cycle regulation of phosphorylation regulation of fatty acid biosynthetic process regulation of nitrogen utilization arginine biosynthetic process via ornithine L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle anthocyanin-containing compound biosynthetic process regulation of membrane potential protein tyrosine/serine/threonine phosphatase activity peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity voltage-gated potassium channel activity Biosynthesis of amino acids Plant-pathogen interaction potassium ion transmembrane transport regulation of catalytic activity amino acid binding | details |
Expression profiles
 Show details about module gene expression profiling |