TreatCFM001756's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of fatty acid biosynthetic process | 0.003009763 | GO:0042304 |
| regulation of phosphorylation | 0.003009763 | GO:0042325 |
| regulation of nitrogen utilization | 0.003009763 | GO:0006808 |
| anthocyanin-containing compound biosynthetic process | 0.005642055 | GO:0009718 |
| ajmaline and sarpagine biosynthesis | 0.005661614 | plantCyc |
| acetylglutamate kinase regulator activity | 0.006436646 | GO:0010307 |
| cellular protein metabolic process | 0.025233487 | GO:0044267 |
| regulation of catalytic activity | 0.027768405 | GO:0050790 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000182 | AT1G15930 (2.00E-38) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T005121 | AT5G10200 (0) | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein |
| CRO_T014219 | AT5G47950 (1.00E-43) | HXXXD-type acyl-transferase family protein |
| CRO_T016055 | AT4G01900 (8.00E-41) | GLB1|GLNB1 homolog |
| CRO_T019228 | AT2G18670 (1.00E-14) | RING/U-box superfamily protein |
| CRO_T023823 | AT5G02970 (4.00E-179) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000309 | actin filament depolymerization Regulation of actin cytoskeleton actin cytoskeleton endosome vacuolar membrane cytosolic large ribosomal subunit trans-Golgi network S-adenosylmethionine-dependent methyltransferase activity actin binding serine-type endopeptidase activity | details |
| TreatCFM000775 | arginine biosynthetic process via ornithine urea cycle ornithine carbamoyltransferase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle Ras signaling pathway ajmaline and sarpagine biosynthesis small GTPase mediated signal transduction Biosynthesis of amino acids amino acid binding transferase activity, transferring acyl groups | details |
| TreatCFM000907 | sucrose degradation III (sucrose invertase) regulation of nitrogen utilization regulation of fatty acid biosynthetic process regulation of phosphorylation acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process Fructose and mannose metabolism Ubiquitin_Proteasome_system, DUB: OTU D-ribose metabolic process ribokinase activity fructokinase activity carbohydrate phosphorylation nucleotidyltransferase activity regulation of catalytic activity chloroplast thylakoid | details |
| TreatCFM001456 | formation of glycosidic bonds, GlycosylTransferases: GTnc eukaryotic translation initiation factor 2 complex multi-eIF complex eukaryotic translation initiation factor 2B complex Transcription_related, Transcription factor: FAR1 malate metabolic process cutin biosynthesis gluconeogenesis I long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis xylan biosynthesis malate dehydrogenase (decarboxylating) (NAD+) activity eukaryotic 48S preinitiation complex cell part translational initiation | details |
| TreatCFM001670 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase MAPK signaling pathway regulation of phosphorylation regulation of nitrogen utilization regulation of fatty acid biosynthetic process acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process photosystem II repair photosystem II assembly chloroplast thylakoid lumen N,N-dimethylaniline monooxygenase activity regulation of catalytic activity NADP binding | details |
| TreatCFM001755 | Phenylpropanoid biosynthesis L-citrulline degradation protein metabolic process arginine biosynthetic process via ornithine urea cycle ornithine carbamoyltransferase activity metalloexopeptidase activity L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle chlorogenic acid biosynthesis II ajmaline and sarpagine biosynthesis chlorogenic acid biosynthesis I jasmonic acid biosynthesis AMPK signaling pathway aminopeptidase activity chloroplast small GTPase mediated signal transduction oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | details |
| TreatCFM001776 | multi-eIF complex eukaryotic translation initiation factor 2 complex myo-inositol biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation L-ascorbate biosynthesis I (L-galactose pathway) L-histidine biosynthesis phytate degradation I histidinol-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process eukaryotic translation initiation factor 2B complex histidine biosynthetic process mannan catabolic process inositol monophosphate 1-phosphatase activity phosphatidylinositol phosphorylation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII mannan endo-1,4-beta-mannosidase activity ribosome binding translational initiation Fructose and mannose metabolism NF-kappa B signaling pathway eukaryotic 48S preinitiation complex | details |
| TreatCFM001935 | L-citrulline degradation ornithine carbamoyltransferase activity acetylglutamate kinase regulator activity L-arginine biosynthesis I (via L-ornithine) urea cycle regulation of phosphorylation regulation of fatty acid biosynthetic process regulation of nitrogen utilization arginine biosynthetic process via ornithine L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle anthocyanin-containing compound biosynthetic process regulation of membrane potential protein tyrosine/serine/threonine phosphatase activity peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity voltage-gated potassium channel activity Biosynthesis of amino acids Plant-pathogen interaction potassium ion transmembrane transport regulation of catalytic activity amino acid binding | details |
| TreatCFM002052 | phosphogluconate dehydrogenase (decarboxylating) activity organic cyclic compound binding S-adenosylmethionine-dependent methyltransferase activity helicase activity NAD binding heterocyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |