TreatCFM000311's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formyltetrahydrofolate deformylase activity | 0.002934435 | GO:0008864 |
| purine nucleotide binding | 0.002934435 | GO:0017076 |
| cyanoalanine nitrilase activity | 0.002934435 | GO:0047427 |
| phosphoenolpyruvate carboxykinase activity | 0.002934435 | GO:0004611 |
| hydroxymethyl-, formyl- and related transferase activity | 0.002934435 | GO:0016742 |
| 3-cyanoalanine hydratase activity | 0.002934435 | GO:0047558 |
| cyanide detoxification I | 0.003899038 | plantCyc |
| L-asparagine degradation I | 0.003899038 | plantCyc |
| Glyoxylate and dicarboxylate metabolism | 0.005909467 | KEGG pathway |
| cyanide catabolic process | 0.006923456 | GO:0019500 |
| embryonic pattern specification | 0.006923456 | GO:0009880 |
| detoxification of nitrogen compound | 0.006923456 | GO:0051410 |
| superpathway of aspartate and asparagine biosynthesis | 0.007356475 | plantCyc |
| myosin heavy chain kinase activity | 0.010054677 | GO:0016905 |
| Pwp2p-containing subcomplex of 90S preribosome | 0.013783052 | GO:0034388 |
| gluconeogenesis | 0.01383689 | GO:0006094 |
| 'de novo' IMP biosynthetic process | 0.01383689 | GO:0006189 |
| Cyanoamino acid metabolism | 0.016719261 | KEGG pathway |
| snoRNA binding | 0.020871117 | GO:0030515 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.037961048 | GO:0000462 |
| amino acid binding | 0.038972343 | GO:0016597 |
| mRNA surveillance pathway | 0.041505379 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.041505379 | KEGG pathway |
| cell division | 0.042354241 | GO:0051301 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.046777058 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001257 | AT4G17360 (9.00E-136) | Formyl transferase |
| CRO_T008146 | AT1G47740 (4.00E-101) | PPPDE putative thiol peptidase family protein |
| CRO_T011553 | AT4G25040 (2.00E-18) | Uncharacterised protein family (UPF0497) |
| CRO_T012869 | AT5G16750 (0) | TOZ|TORMOZEMBRYO DEFECTIVE |
| CRO_T015319 | AT3G15010 (1.00E-15) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T015445 | AT2G27450 (4.00E-13) | NLP1|nitrilase-like protein 1 |
| CRO_T017832 | AT1G03530 (2.00E-59) | NAF1|nuclear assembly factor 1 |
| CRO_T024848 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000494 | heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis Transcription_related, Transcription factor: BES1 trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) heptaprenyl diphosphate synthase activity 3'-5'-exoribonuclease activity N-acetyltransferase activity hydrolase activity | details |
| TreatCFM000909 | 5'-3' exoribonuclease activity RNA phosphodiester bond hydrolysis, exonucleolytic phosphate-containing compound metabolic process inorganic diphosphatase activity Insulin signaling pathway protein polyubiquitination proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination involved in ubiquitin-dependent protein catabolic process Ribosome biogenesis in eukaryotes | details |
| TreatCFM001279 | UMP biosynthesis I dihydroorotate dehydrogenase activity hydroxymethyl-, formyl- and related transferase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism protein refolding regulation of leaf development pyrimidine ribonucleotide biosynthetic process 'de novo' IMP biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process Transcription_related, Transcription factor: TCP Pyrimidine metabolism mitochondrion amino acid binding RNA degradation | details |
| TreatCFM001304 | Cytochrome_P450, Cytochrome P450: CYP94D dihydroneopterin aldolase activity hydroxymethyl-, formyl- and related transferase activity cyanoalanine nitrilase activity formyltetrahydrofolate deformylase activity 3-cyanoalanine hydratase activity folic acid biosynthetic process cyanide catabolic process detoxification of nitrogen compound Glyoxylate and dicarboxylate metabolism tetrahydrofolate biosynthetic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I cyanide detoxification I L-asparagine degradation I Cyanoamino acid metabolism Folate biosynthesis 'de novo' IMP biosynthetic process aromatase activity superpathway of aspartate and asparagine biosynthesis tetrahydrofolate biosynthesis II snoRNA binding rRNA processing amino acid binding | details |
| TreatCFM001470 | putrescine biosynthesis II putrescine biosynthetic process hydroxymethyl-, formyl- and related transferase activity agmatine deiminase activity protein-arginine deiminase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism 'de novo' IMP biosynthetic process structural constituent of ribosome Cul3-RING ubiquitin ligase complex mitochondrial small ribosomal subunit Arginine and proline metabolism large ribosomal subunit amino acid binding | details |
| TreatCFM001602 | isoleucyl-tRNA aminoacylation isoleucine-tRNA ligase activity aminoacyl-tRNA editing activity regulation of translational fidelity Aminoacyl-tRNA biosynthesis transcription factor TFIIE complex protein transmembrane transport protein localization to organelle transcription initiation from RNA polymerase II promoter protein channel activity cytosol Basal transcription factors translational initiation Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001622 | cytoplasmic ribonucleoprotein granule hydroxymethyl-, formyl- and related transferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity trans-octaprenyltranstransferase activity formyltetrahydrofolate deformylase activity dihydroneopterin aldolase activity Glyoxylate and dicarboxylate metabolism heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis heptaprenyl diphosphate synthase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Folate biosynthesis polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) folic acid biosynthetic process tetrahydrofolate biosynthesis II chromosome segregation tetrahydrofolate biosynthetic process 'de novo' IMP biosynthetic process small-subunit processome snoRNA binding regulation of gene expression isoprenoid biosynthetic process Terpenoid backbone biosynthesis rRNA processing RNA secondary structure unwinding translational initiation amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Photosynthesis ATP-dependent RNA helicase activity | details |
| TreatCFM001801 | positive regulation of transport RNA binding protein binding involved in protein folding Ribosome biogenesis in eukaryotes tRNA processing rRNA processing unfolded protein binding | details |
| TreatCFM001941 | transcription factor TFIIE complex Basal transcription factors transcription initiation from RNA polymerase II promoter translational initiation | details |
| TreatCFM002077 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase cysteinyl-tRNA aminoacylation cysteine-tRNA ligase activity peptidyl-lysine monomethylation protein-lysine N-methyltransferase activity abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity Aminoacyl-tRNA biosynthesis MAPK signaling pathway - plant Plant-pathogen interaction intracellular signal transduction cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |