TreatCFM000922's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| polycistronic mRNA processing | 0.004431642 | GO:0031426 |
| chloroplast RNA processing | 0.004431642 | GO:0031425 |
| small GTPase mediated signal transduction | 0.032842763 | GO:0007264 |
| intracellular | 0.038901794 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007533 | AT3G49860 (2.00E-21) | ARLA1B|ADP-ribosylation factor-like A1B |
| CRO_T011683 | AT4G08630 (2.00E-04) | unknown protein |
| CRO_T021908 | AT3G16540 (1.00E-119) | DEG11|degradation of periplasmic proteins 11; DegP11|DegP protease 11 |
| CRO_T024167 | AT1G18485 (5.00E-79) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T029204 | AT2G41450 (1.00E-11) | N-acetyltransferases; N-acetyltransferases |
| CRO_T029255 | AT2G03880 (7.00E-126) | REME1|required for efficiency of mitochondrial editing 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000139 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of embryonic development protein N-glycosylation (eukaryotic, high mannose) glycyl-tRNA aminoacylation glycine-tRNA ligase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis transferase activity, transferring hexosyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy transferase activity, transferring acyl groups | details |
| TreatCFM000209 | intracellular Ubiquitin_Proteasome_system, DUB: OTU | details |
| TreatCFM000269 | intracellular COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000299 | L-tyrosine biosynthesis II Mannose type O-glycan biosyntheis Other types of O-glycan biosynthesis tyrosine biosynthetic process histone exchange regulation of nitric-oxide synthase activity | details |
| TreatCFM000309 | actin filament depolymerization Regulation of actin cytoskeleton actin cytoskeleton endosome vacuolar membrane cytosolic large ribosomal subunit trans-Golgi network S-adenosylmethionine-dependent methyltransferase activity actin binding serine-type endopeptidase activity | details |
| TreatCFM000340 | details | |
| TreatCFM000396 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Glycerolipid metabolism phospholipid remodeling (phosphatidylcholine, yeast) O-acyltransferase activity lipase activity diacylglycerol and triacylglycerol biosynthesis nitrogen compound metabolic process lipid metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000397 | small GTPase mediated signal transduction GTP binding intracellular | details |
| TreatCFM000422 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000425 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis small GTPase mediated signal transduction transferase activity, transferring hexosyl groups GTP binding | details |
| TreatCFM000432 | phosphoenolpyruvate carboxykinase (ATP) activity gluconeogenesis I gluconeogenesis small GTPase mediated signal transduction Carbon metabolism | details |
| TreatCFM000516 | intracellular fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM000590 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction Transcription_related, Transcription factor: M-type MAP kinase kinase activity | details |
| TreatCFM000630 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000666 | beta-N-acetylhexosaminidase activity UDP-glucosyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Amino sugar and nucleotide sugar metabolism phosphoenolpyruvate carboxykinase (ATP) activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds sulfotransferase activity gluconeogenesis I Cutin, suberine and wax biosynthesis | details |
| TreatCFM000782 | small GTPase mediated signal transduction GTP binding intracellular | details |
| TreatCFM000834 | small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000848 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc intracellular mannosyl-oligosaccharide glucosidase activity N-Glycan biosynthesis oligosaccharide metabolic process protein N-linked glycosylation endoplasmic reticulum membrane DNA-directed RNA polymerase activity small GTPase mediated signal transduction | details |
| TreatCFM000871 | intracellular GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000926 | Cyanoamino acid metabolism cyanide biosynthetic process small GTPase mediated signal transduction defense response | details |
| TreatCFM001026 | formation of glycosidic bonds, GlycosylTransferases: GTnc 1,3-β-D-glucan biosynthesis Human papillomavirus infection Nucleotide excision repair MicroRNAs in cancer gamma-tubulin complex intracellular 1,3-beta-D-glucan synthase complex ribonuclease III activity GTP binding nuclease activity ARF guanyl-nucleotide exchange factor activity 1,3-beta-D-glucan synthase activity (1->3)-beta-D-glucan biosynthetic process cytoplasmic microtubule organization regulation of ARF protein signal transduction microtubule nucleation nucleic acid metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic microtubule positive regulation of GTPase activity RNA processing | details |
| TreatCFM001174 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity MAP kinase activity MAPK signaling pathway - plant MAPK cascade vesicle-mediated transport ATPase activity, coupled to transmembrane movement of substances | details |
| TreatCFM001179 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM001204 | 1,3-β-D-glucan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome spliceosomal complex 1,3-beta-D-glucan synthase complex ubiquitin ligase complex positive regulation of proteasomal ubiquitin-dependent protein catabolic process cullin deneddylation (1->3)-beta-D-glucan biosynthetic process ubiquitin conjugating enzyme binding 1,3-beta-D-glucan synthase activity | details |
| TreatCFM001399 | intracellular | details |
| TreatCFM001708 | L-leucine biosynthesis hydro-lyase activity beta-tubulin binding DNA-3-methyladenine glycosylase activity Transcription_related, Transcription regulator: SET Base excision repair Lysine degradation 2-Oxocarboxylic acid metabolism tubulin complex assembly post-chaperonin tubulin folding pathway GTPase activator activity microtubule cytoskeleton organization base-excision repair | details |
Expression profiles
 Show details about module gene expression profiling |