TreatCFM000425's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000886394 | cazy family |
| protein N-glycosylation (eukaryotic, high mannose) | 0.004071992 | plantCyc |
| N-Glycan biosynthesis | 0.00918654 | KEGG pathway |
| small GTPase mediated signal transduction | 0.011823395 | GO:0007264 |
| transferase activity, transferring hexosyl groups | 0.017514326 | GO:0016758 |
| GTP binding | 0.045436523 | GO:0005525 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006067 | - | - |
| CRO_T007533 | AT3G49860 (2.00E-21) | ARLA1B|ADP-ribosylation factor-like A1B |
| CRO_T010801 | - | - |
| CRO_T015186 | AT5G38460 (6.00E-62) | ALG6, ALG8 glycosyltransferase family |
| CRO_T021130 | - | - |
| CRO_T025259 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000084 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) C-19 gibberellin 2-beta-dioxygenase activity gibberellin catabolic process aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity transferase activity, transferring hexosyl groups Diterpenoid biosynthesis N-Glycan biosynthesis cell wall modification pectin catabolic process response to light stimulus negative regulation of catalytic activity Pentose and glucuronate interconversions | details |
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000139 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of embryonic development protein N-glycosylation (eukaryotic, high mannose) glycyl-tRNA aminoacylation glycine-tRNA ligase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis transferase activity, transferring hexosyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy transferase activity, transferring acyl groups | details |
| TreatCFM000209 | intracellular Ubiquitin_Proteasome_system, DUB: OTU | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000257 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds protein N-glycosylation (eukaryotic, high mannose) gene silencing by RNA nitrogen compound metabolic process N-Glycan biosynthesis transferase activity, transferring hexosyl groups transferase activity, transferring acyl groups | details |
| TreatCFM000269 | intracellular COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000299 | L-tyrosine biosynthesis II Mannose type O-glycan biosyntheis Other types of O-glycan biosynthesis tyrosine biosynthetic process histone exchange regulation of nitric-oxide synthase activity | details |
| TreatCFM000340 | details | |
| TreatCFM000381 | 9-cis-epoxycarotenoid dioxygenase activity lipid transporter activity protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc lipid transport | details |
| TreatCFM000394 | protein N-glycosylation (eukaryotic, high mannose) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Toll and Imd signaling pathway root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process glutaminyl-tRNAGln biosynthesis via transamidation postreplication repair protein K63-linked ubiquitination glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity DNA topoisomerase activity mitochondrial translation response to nitrate Ubiquitin_Proteasome_system, E2: UBC chitin catabolic process multidimensional cell growth glutamyl-tRNA(Gln) amidotransferase complex Aminoacyl-tRNA biosynthesis Homologous recombination N-Glycan biosynthesis response to heat chitinase activity response to water deprivation response to cytokinin cellulose biosynthetic process response to salt stress ubiquitin protein ligase binding transferase activity, transferring hexosyl groups | details |
| TreatCFM000396 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Glycerolipid metabolism phospholipid remodeling (phosphatidylcholine, yeast) O-acyltransferase activity lipase activity diacylglycerol and triacylglycerol biosynthesis nitrogen compound metabolic process lipid metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000397 | small GTPase mediated signal transduction GTP binding intracellular | details |
| TreatCFM000422 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000432 | phosphoenolpyruvate carboxykinase (ATP) activity gluconeogenesis I gluconeogenesis small GTPase mediated signal transduction Carbon metabolism | details |
| TreatCFM000483 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis transferase activity, transferring hexosyl groups | details |
| TreatCFM000516 | intracellular fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM000541 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) ribosomal small subunit assembly mRNA binding transferase activity, transferring hexosyl groups N-Glycan biosynthesis rRNA binding | details |
| TreatCFM000550 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) transferase activity, transferring hexosyl groups N-Glycan biosynthesis | details |
| TreatCFM000630 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000666 | beta-N-acetylhexosaminidase activity UDP-glucosyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Amino sugar and nucleotide sugar metabolism phosphoenolpyruvate carboxykinase (ATP) activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds sulfotransferase activity gluconeogenesis I Cutin, suberine and wax biosynthesis | details |
| TreatCFM000782 | small GTPase mediated signal transduction GTP binding intracellular | details |
| TreatCFM000834 | small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000848 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc intracellular mannosyl-oligosaccharide glucosidase activity N-Glycan biosynthesis oligosaccharide metabolic process protein N-linked glycosylation endoplasmic reticulum membrane DNA-directed RNA polymerase activity small GTPase mediated signal transduction | details |
| TreatCFM000852 | fucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis fucosylation Lewis a epitope biosynthetic process Golgi cisterna membrane protein glycosylation | details |
| TreatCFM000871 | intracellular GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000922 | polycistronic mRNA processing chloroplast RNA processing small GTPase mediated signal transduction intracellular | details |
| TreatCFM000926 | Cyanoamino acid metabolism cyanide biosynthetic process small GTPase mediated signal transduction defense response | details |
| TreatCFM001026 | formation of glycosidic bonds, GlycosylTransferases: GTnc 1,3-β-D-glucan biosynthesis Human papillomavirus infection Nucleotide excision repair MicroRNAs in cancer gamma-tubulin complex intracellular 1,3-beta-D-glucan synthase complex ribonuclease III activity GTP binding nuclease activity ARF guanyl-nucleotide exchange factor activity 1,3-beta-D-glucan synthase activity (1->3)-beta-D-glucan biosynthetic process cytoplasmic microtubule organization regulation of ARF protein signal transduction microtubule nucleation nucleic acid metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic microtubule positive regulation of GTPase activity RNA processing | details |
| TreatCFM001179 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM001204 | 1,3-β-D-glucan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome spliceosomal complex 1,3-beta-D-glucan synthase complex ubiquitin ligase complex positive regulation of proteasomal ubiquitin-dependent protein catabolic process cullin deneddylation (1->3)-beta-D-glucan biosynthetic process ubiquitin conjugating enzyme binding 1,3-beta-D-glucan synthase activity | details |
| TreatCFM001399 | intracellular | details |
Expression profiles
 Show details about module gene expression profiling |