TreatCFM001204's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 1,3-β-D-glucan biosynthesis | 0.005659778 | plantCyc |
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.027246535 | ubs family |
| COP9 signalosome | 0.027277423 | GO:0008180 |
| spliceosomal complex | 0.027277423 | GO:0005681 |
| 1,3-beta-D-glucan synthase complex | 0.027277423 | GO:0000148 |
| ubiquitin ligase complex | 0.027277423 | GO:0000151 |
| positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 0.032106771 | GO:0032436 |
| cullin deneddylation | 0.032106771 | GO:0010388 |
| (1->3)-beta-D-glucan biosynthetic process | 0.032106771 | GO:0006075 |
| ubiquitin conjugating enzyme binding | 0.039005747 | GO:0031624 |
| 1,3-beta-D-glucan synthase activity | 0.039005747 | GO:0003843 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003405 | AT3G26000 (1.00E-94) | Ribonuclease inhibitor |
| CRO_T007533 | AT3G49860 (2.00E-21) | ARLA1B|ADP-ribosylation factor-like A1B |
| CRO_T011419 | AT2G31510 (7.00E-171) | ARI7|ARIADNE 7; ATARI7|ARABIDOPSIS ARIADNE 7 |
| CRO_T012733 | AT4G26430 (7.00E-134) | CSN6B|COP9 signalosome subunit 6B |
| CRO_T013804 | AT1G20410 (4.00E-97) | Pseudouridine synthase family protein |
| CRO_T016730 | AT3G04820 (8.00E-09) | Pseudouridine synthase family protein |
| CRO_T017811 | AT5G06160 (8.00E-53) | ATO|ATROPOS |
| CRO_T018359 | AT2G33490 (1.00E-17) | hydroxyproline-rich glycoprotein family protein |
| CRO_T020684 | AT3G22430 (8.00E-23) | |
| CRO_T028243 | AT3G52050 (2.00E-19) | 5'-3' exonuclease family protein |
| CRO_T029084 | - | - |
| CRO_T032496 | AT1G05570 (0) | CALS1|callose synthase 1; GSL6|GLUCAN SYNTHASE-LIKE 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000065 | Cytochrome_P450, Cytochrome P450: CYP724A | details |
| TreatCFM000073 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Oxidative phosphorylation | details |
| TreatCFM000076 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Ubiquitin_Proteasome_system, DUB: JAMM defense response, incompatible interaction histone modification activation of MAPK activity transcription elongation from RNA polymerase II promoter cullin deneddylation COP9 signalosome Cdc73/Paf1 complex MAP kinase kinase activity MAP kinase activity transcription coactivator activity transcription from RNA polymerase II promoter MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000139 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of embryonic development protein N-glycosylation (eukaryotic, high mannose) glycyl-tRNA aminoacylation glycine-tRNA ligase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis transferase activity, transferring hexosyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy transferase activity, transferring acyl groups | details |
| TreatCFM000182 | trans-zeatin biosynthesis | details |
| TreatCFM000209 | intracellular Ubiquitin_Proteasome_system, DUB: OTU | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000233 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000269 | intracellular COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000299 | L-tyrosine biosynthesis II Mannose type O-glycan biosyntheis Other types of O-glycan biosynthesis tyrosine biosynthetic process histone exchange regulation of nitric-oxide synthase activity | details |
| TreatCFM000340 | details | |
| TreatCFM000368 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000396 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Glycerolipid metabolism phospholipid remodeling (phosphatidylcholine, yeast) O-acyltransferase activity lipase activity diacylglycerol and triacylglycerol biosynthesis nitrogen compound metabolic process lipid metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000397 | small GTPase mediated signal transduction GTP binding intracellular | details |
| TreatCFM000422 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000425 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis small GTPase mediated signal transduction transferase activity, transferring hexosyl groups GTP binding | details |
| TreatCFM000432 | phosphoenolpyruvate carboxykinase (ATP) activity gluconeogenesis I gluconeogenesis small GTPase mediated signal transduction Carbon metabolism | details |
| TreatCFM000434 | ADP dimethylallyltransferase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds ATP dimethylallyltransferase activity | details |
| TreatCFM000442 | cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome Phenylpropanoid biosynthesis intracellular part ATP-dependent helicase activity coenzyme binding | details |
| TreatCFM000510 | pyrimidine ribonucleosides salvage I cullin deneddylation pyrimidine nucleoside salvage pyrimidine nucleobase metabolic process DNA integration Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome uridine kinase activity Transcription_related, Transcription factor: B3 | details |
| TreatCFM000516 | intracellular fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM000557 | Transcription_related, Transcription factor: NF-YC ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation NLS-bearing protein import into nucleus nuclear periphery COPII vesicle coat nuclear membrane ER to Golgi vesicle-mediated transport | details |
| TreatCFM000574 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: WRKY | details |
| TreatCFM000600 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000601 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000607 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000608 | COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation DNA integration | details |
| TreatCFM000613 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex precatalytic spliceosome COP9 signalosome cullin deneddylation proteasome-mediated ubiquitin-dependent protein catabolic process response to salt stress Proteasome | details |
| TreatCFM000630 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000631 | COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation DNA integration | details |
| TreatCFM000666 | beta-N-acetylhexosaminidase activity UDP-glucosyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Amino sugar and nucleotide sugar metabolism phosphoenolpyruvate carboxykinase (ATP) activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds sulfotransferase activity gluconeogenesis I Cutin, suberine and wax biosynthesis | details |
| TreatCFM000715 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000774 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000782 | small GTPase mediated signal transduction GTP binding intracellular | details |
| TreatCFM000819 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination Ubiquitin_Proteasome_system, E2: UBC vindoline and vinblastine biosynthesis spliceosomal complex mRNA splicing, via spliceosome Spliceosome | details |
| TreatCFM000829 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000834 | small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000848 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc intracellular mannosyl-oligosaccharide glucosidase activity N-Glycan biosynthesis oligosaccharide metabolic process protein N-linked glycosylation endoplasmic reticulum membrane DNA-directed RNA polymerase activity small GTPase mediated signal transduction | details |
| TreatCFM000859 | coenzyme A biosynthesis I Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome small ribosomal subunit | details |
| TreatCFM000869 | fucosyltransferase activity Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome Golgi cisterna membrane cullin deneddylation protein glycosylation | details |
| TreatCFM000870 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3: U-box protein ubiquitination | details |
| TreatCFM000871 | intracellular GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000876 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000922 | polycistronic mRNA processing chloroplast RNA processing small GTPase mediated signal transduction intracellular | details |
| TreatCFM000923 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000926 | Cyanoamino acid metabolism cyanide biosynthetic process small GTPase mediated signal transduction defense response | details |
| TreatCFM000964 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Phenylpropanoid biosynthesis coenzyme binding | details |
| TreatCFM001026 | formation of glycosidic bonds, GlycosylTransferases: GTnc 1,3-β-D-glucan biosynthesis Human papillomavirus infection Nucleotide excision repair MicroRNAs in cancer gamma-tubulin complex intracellular 1,3-beta-D-glucan synthase complex ribonuclease III activity GTP binding nuclease activity ARF guanyl-nucleotide exchange factor activity 1,3-beta-D-glucan synthase activity (1->3)-beta-D-glucan biosynthetic process cytoplasmic microtubule organization regulation of ARF protein signal transduction microtubule nucleation nucleic acid metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic microtubule positive regulation of GTPase activity RNA processing | details |
| TreatCFM001067 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001069 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: B3 catalytic activity | details |
| TreatCFM001084 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001102 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001179 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM001203 | nuclear envelope spliceosomal complex protein import into nucleus mRNA splicing, via spliceosome Transcription_related, Transcription factor: B3 Spliceosome Ran GTPase binding | details |
| TreatCFM001206 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome nitrogen compound metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Phenylpropanoid biosynthesis plastid coenzyme binding transferase activity, transferring acyl groups | details |
| TreatCFM001221 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM001239 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process starch biosynthetic process glycogen biosynthetic process Hedgehog signaling pathway protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein polyubiquitination biosynthetic process ubiquitin ligase complex ubiquitin conjugating enzyme binding Cell cycle - Caulobacter Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001254 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001329 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001399 | intracellular | details |
| TreatCFM001541 | ligase activity Glucagon signaling pathway Toll and Imd signaling pathway transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity postreplication repair heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process protein K63-linked ubiquitination Cell cycle glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding Ubiquitin mediated proteolysis | details |
| TreatCFM001637 | Ubiquitin_Proteasome_system, DUB: JAMM rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II 4-hydroxybenzoate biosynthesis I (eukaryotes) rRNA primary transcript binding oligosaccharyltransferase complex COP9 signalosome maturation of LSU-rRNA maturation of 5.8S rRNA protein N-linked glycosylation cullin deneddylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ribosomal large subunit assembly NAD binding preribosome, large subunit precursor N-Glycan biosynthesis embryo development ending in seed dormancy | details |
| TreatCFM001704 | Ubiquitin_Proteasome_system, DUB: JAMM hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds RNA polymerase II transcription factor activity, sequence-specific DNA binding cullin deneddylation ribosomal large subunit assembly nitrogen compound metabolic process COP9 signalosome nucleoplasm transferase activity, transferring acyl groups | details |
Expression profiles
 Show details about module gene expression profiling |