TreatCFM000993's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| PRPP biosynthesis I | 0.000886394 | plantCyc |
| phenylalanine-tRNA ligase complex | 0.005909729 | GO:0009328 |
| nucleoside metabolic process | 0.008464488 | GO:0009116 |
| phenylalanyl-tRNA aminoacylation | 0.008464488 | GO:0006432 |
| brassinosteroid mediated signaling pathway | 0.008464488 | GO:0009742 |
| nucleotide biosynthetic process | 0.008464488 | GO:0009165 |
| ribose phosphate diphosphokinase activity | 0.011259969 | GO:0004749 |
| phenylalanine-tRNA ligase activity | 0.011259969 | GO:0004826 |
| Aminoacyl-tRNA biosynthesis | 0.011296492 | KEGG pathway |
| Transcription_related, Transcription regulator: PHD | 0.016984843 | TF family |
| protein dephosphorylation | 0.045585186 | GO:0006470 |
| phosphoprotein phosphatase activity | 0.048121714 | GO:0004721 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000067 | - | - |
| CRO_T004326 | AT4G39280 (7.00E-135) | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative |
| CRO_T010618 | AT1G10700 (2.00E-129) | PRS3|phosphoribosyl pyrophosphate (PRPP) synthase 3 |
| CRO_T025086 | - | - |
| CRO_T025760 | AT1G08420 (0) | BSL2|BRI1 suppressor 1 (BSU1)-like 2 |
| CRO_T033021 | AT4G14920 (2.00E-14) | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000228 | PRPP biosynthesis I nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box plasma membrane | details |
| TreatCFM000564 | PRPP biosynthesis I xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity phospholipid binding translational initiation response to salt stress Spliceosome precatalytic spliceosome | details |
| TreatCFM001011 | PRPP biosynthesis I Transcription_related, Transcription factor: E2F-DP TGF-beta signaling pathway regulation of protein phosphatase type 2A activity nucleotide biosynthetic process nucleoside metabolic process Cell cycle ribose phosphate diphosphokinase activity RNA polymerase II transcription factor activity, sequence-specific DNA binding protein phosphatase type 2A regulator activity protein phosphatase type 2A complex transcription factor complex regulation of transcription from RNA polymerase II promoter RNA secondary structure unwinding mRNA surveillance pathway | details |
| TreatCFM001130 | PRPP biosynthesis I phosphopantetheine binding ribose phosphate diphosphokinase activity nucleoside metabolic process nucleotide biosynthetic process fatty acid biosynthetic process small GTPase mediated signal transduction | details |
| TreatCFM001301 | Cytochrome_P450, Cytochrome P450: CYP85A Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family ribonuclease H2 complex fatty acid elongation -- saturated L-histidine biosynthesis L-leucine degradation I PRPP biosynthesis I L-valine degradation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) lipid homeostasis leucine catabolic process nucleoside metabolic process nucleotide biosynthetic process histidine biosynthetic process sodium ion transport RNA catabolic process branched-chain amino acid catabolic process fatty acid beta-oxidation using acyl-CoA dehydrogenase isovaleryl-CoA dehydrogenase activity histidinol dehydrogenase activity Valine, leucine and isoleucine degradation Brassinosteroid biosynthesis RNA-DNA hybrid ribonuclease activity ribose phosphate diphosphokinase activity | details |
| TreatCFM001478 | PRPP biosynthesis I Ubiquitin_Proteasome_system, E3: HECT nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Glycerolipid metabolism Ubiquitin mediated proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |