TreatCFM000564's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| PRPP biosynthesis I | 0.003102103 | plantCyc |
| xylogalacturonan biosynthesis | 0.00712346 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.007219016 | cazy family |
| nucleoside metabolic process | 0.011799994 | GO:0009116 |
| nucleotide biosynthetic process | 0.011799994 | GO:0009165 |
| ribose phosphate diphosphokinase activity | 0.013135078 | GO:0004749 |
| phospholipid binding | 0.013135078 | GO:0005543 |
| translational initiation | 0.029980824 | GO:0006413 |
| response to salt stress | 0.029980824 | GO:0009651 |
| Spliceosome | 0.034245433 | KEGG pathway |
| precatalytic spliceosome | 0.036139902 | GO:0071011 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000192 | AT5G58040 (5.00E-26) | ATFIP1[V]|homolog of yeast FIP1 [V] |
| CRO_T008719 | - | - |
| CRO_T010618 | AT1G10700 (2.00E-129) | PRS3|phosphoribosyl pyrophosphate (PRPP) synthase 3 |
| CRO_T011242 | AT1G13020 (3.00E-14) | EIF4B2|eukaryotic initiation factor 4B2 |
| CRO_T026892 | AT2G01600 (7.00E-16) | ENTH/ANTH/VHS superfamily protein |
| CRO_T027212 | AT5G37370 (1.00E-46) | ATSRL1|PRP38 family protein |
| CRO_T029516 | AT1G74680 (3.00E-21) | Exostosin family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000228 | PRPP biosynthesis I nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box plasma membrane | details |
| TreatCFM000285 | Ubiquitin_Proteasome_system, DUB: JAMM precatalytic spliceosome proteasome complex response to salt stress proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Spliceosome | details |
| TreatCFM000613 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex precatalytic spliceosome COP9 signalosome cullin deneddylation proteasome-mediated ubiquitin-dependent protein catabolic process response to salt stress Proteasome | details |
| TreatCFM000993 | PRPP biosynthesis I phenylalanine-tRNA ligase complex nucleoside metabolic process phenylalanyl-tRNA aminoacylation brassinosteroid mediated signaling pathway nucleotide biosynthetic process ribose phosphate diphosphokinase activity phenylalanine-tRNA ligase activity Aminoacyl-tRNA biosynthesis Transcription_related, Transcription regulator: PHD protein dephosphorylation phosphoprotein phosphatase activity | details |
| TreatCFM001011 | PRPP biosynthesis I Transcription_related, Transcription factor: E2F-DP TGF-beta signaling pathway regulation of protein phosphatase type 2A activity nucleotide biosynthetic process nucleoside metabolic process Cell cycle ribose phosphate diphosphokinase activity RNA polymerase II transcription factor activity, sequence-specific DNA binding protein phosphatase type 2A regulator activity protein phosphatase type 2A complex transcription factor complex regulation of transcription from RNA polymerase II promoter RNA secondary structure unwinding mRNA surveillance pathway | details |
| TreatCFM001130 | PRPP biosynthesis I phosphopantetheine binding ribose phosphate diphosphokinase activity nucleoside metabolic process nucleotide biosynthetic process fatty acid biosynthetic process small GTPase mediated signal transduction | details |
| TreatCFM001301 | Cytochrome_P450, Cytochrome P450: CYP85A Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family ribonuclease H2 complex fatty acid elongation -- saturated L-histidine biosynthesis L-leucine degradation I PRPP biosynthesis I L-valine degradation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) lipid homeostasis leucine catabolic process nucleoside metabolic process nucleotide biosynthetic process histidine biosynthetic process sodium ion transport RNA catabolic process branched-chain amino acid catabolic process fatty acid beta-oxidation using acyl-CoA dehydrogenase isovaleryl-CoA dehydrogenase activity histidinol dehydrogenase activity Valine, leucine and isoleucine degradation Brassinosteroid biosynthesis RNA-DNA hybrid ribonuclease activity ribose phosphate diphosphokinase activity | details |
| TreatCFM001478 | PRPP biosynthesis I Ubiquitin_Proteasome_system, E3: HECT nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Glycerolipid metabolism Ubiquitin mediated proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |