TreatCFM001011's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
PRPP biosynthesis I0.000886394plantCyc
Transcription_related, Transcription factor: E2F-DP0.001240768TF family
TGF-beta signaling pathway 0.002925532KEGG pathway
regulation of protein phosphatase type 2A activity0.012407019GO:0034047
nucleotide biosynthetic process0.012407019GO:0009165
nucleoside metabolic process0.012407019GO:0009116
Cell cycle 0.012407019KEGG pathway
ribose phosphate diphosphokinase activity0.016504GO:0004749
RNA polymerase II transcription factor activity, sequence-specific DNA binding0.016504GO:0000981
protein phosphatase type 2A regulator activity0.026392746GO:0008601
protein phosphatase type 2A complex0.030811321GO:0000159
transcription factor complex0.030811321GO:0005667
regulation of transcription from RNA polymerase II promoter0.035994614GO:0006357
RNA secondary structure unwinding0.035994614GO:0010501
mRNA surveillance pathway 0.040713085KEGG pathway

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T000535AT3G01540 (2.00E-12)ATDRH1|DEAD BOX RNA HELICASE 1
CRO_T008139AT4G10080 (2.00E-18)unknown protein
CRO_T008569AT5G03415 (7.00E-101)ATDPB; DPB|Transcription factor DP
CRO_T010618AT1G10700 (2.00E-129)PRS3|phosphoribosyl pyrophosphate (PRPP) synthase 3
CRO_T015916AT3G09880 (0)ATB' BETA|Protein phosphatase 2A regulatory B subunit family protein
CRO_T028486--

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
TreatCFM000228PRPP biosynthesis I
nucleoside metabolic process
nucleotide biosynthetic process
ribose phosphate diphosphokinase activity
Ubiquitin_Proteasome_system, E3 adaptor: F-box
plasma membrane
details
TreatCFM000564PRPP biosynthesis I
xylogalacturonan biosynthesis
formation of glycosidic bonds, GlycosylTransferases: GTnc
nucleoside metabolic process
nucleotide biosynthetic process
ribose phosphate diphosphokinase activity
phospholipid binding
translational initiation
response to salt stress
Spliceosome
precatalytic spliceosome
details
TreatCFM000649malate synthase activity
glyoxysome
Protein_kinases_phosphatases, PPC:1.6.4: RKF3 Like Kinase
3-hydroxyacyl-CoA dehydrogenase activity
Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family
glyoxylate cycle
unsaturated, even numbered fatty acid β-oxidation
fatty acid β-oxidation II (peroxisome)
fatty acid metabolic process
Wnt signaling pathway
protein serine/threonine kinase activity
regulation of cell shape
Endocytosis
tricarboxylic acid cycle
very long chain fatty acid biosynthesis II
Fatty acid metabolism
details
TreatCFM000993PRPP biosynthesis I
phenylalanine-tRNA ligase complex
nucleoside metabolic process
phenylalanyl-tRNA aminoacylation
brassinosteroid mediated signaling pathway
nucleotide biosynthetic process
ribose phosphate diphosphokinase activity
phenylalanine-tRNA ligase activity
Aminoacyl-tRNA biosynthesis
Transcription_related, Transcription regulator: PHD
protein dephosphorylation
phosphoprotein phosphatase activity
details
TreatCFM001042Transcription_related, Transcription factor: bZIP
regulation of signal transduction
regulation of gene expression
RNA secondary structure unwinding
mRNA splicing, via spliceosome
details
TreatCFM001130PRPP biosynthesis I
phosphopantetheine binding
ribose phosphate diphosphokinase activity
nucleoside metabolic process
nucleotide biosynthetic process
fatty acid biosynthetic process
small GTPase mediated signal transduction
details
TreatCFM001301Cytochrome_P450, Cytochrome P450: CYP85A
Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family
ribonuclease H2 complex
fatty acid elongation -- saturated
L-histidine biosynthesis
L-leucine degradation I
PRPP biosynthesis I
L-valine degradation I
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
lipid homeostasis
leucine catabolic process
nucleoside metabolic process
nucleotide biosynthetic process
histidine biosynthetic process
sodium ion transport
RNA catabolic process
branched-chain amino acid catabolic process
fatty acid beta-oxidation using acyl-CoA dehydrogenase
isovaleryl-CoA dehydrogenase activity
histidinol dehydrogenase activity
Valine, leucine and isoleucine degradation
Brassinosteroid biosynthesis
RNA-DNA hybrid ribonuclease activity
ribose phosphate diphosphokinase activity
details
TreatCFM001478PRPP biosynthesis I
Ubiquitin_Proteasome_system, E3: HECT
nucleoside metabolic process
nucleotide biosynthetic process
ribose phosphate diphosphokinase activity
Glycerolipid metabolism
Ubiquitin mediated proteolysis
details
TreatCFM001811cytoplasm
ubiquitin-protein transferase activity
MAPK signaling pathway - yeast
Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family
Ubiquitin_Proteasome_system, E3: HECT
regulation of shoot system development
regulation of signal transduction
seed maturation
regulation of seed germination
Wnt signaling pathway
regulation of cell shape
Transcription_related, Transcription factor: Trihelix
Endocytosis
transcription regulatory region DNA binding
Ubiquitin mediated proteolysis
Transcription_related, Transcription factor: C3H
zinc ion binding
protein ubiquitination involved in ubiquitin-dependent protein catabolic process
peptidyl-serine phosphorylation
nucleus
nucleolus
embryo development ending in seed dormancy
details

Expression profiles


Show details about module gene expression profiling
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