TreatCFM001011's detailed annotation
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
PRPP biosynthesis I | 0.000886394 | plantCyc |
Transcription_related, Transcription factor: E2F-DP | 0.001240768 | TF family |
TGF-beta signaling pathway | 0.002925532 | KEGG pathway |
regulation of protein phosphatase type 2A activity | 0.012407019 | GO:0034047 |
nucleotide biosynthetic process | 0.012407019 | GO:0009165 |
nucleoside metabolic process | 0.012407019 | GO:0009116 |
Cell cycle | 0.012407019 | KEGG pathway |
ribose phosphate diphosphokinase activity | 0.016504 | GO:0004749 |
RNA polymerase II transcription factor activity, sequence-specific DNA binding | 0.016504 | GO:0000981 |
protein phosphatase type 2A regulator activity | 0.026392746 | GO:0008601 |
protein phosphatase type 2A complex | 0.030811321 | GO:0000159 |
transcription factor complex | 0.030811321 | GO:0005667 |
regulation of transcription from RNA polymerase II promoter | 0.035994614 | GO:0006357 |
RNA secondary structure unwinding | 0.035994614 | GO:0010501 |
mRNA surveillance pathway | 0.040713085 | KEGG pathway |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T000535 | AT3G01540 (2.00E-12) | ATDRH1|DEAD BOX RNA HELICASE 1 |
CRO_T008139 | AT4G10080 (2.00E-18) | unknown protein |
CRO_T008569 | AT5G03415 (7.00E-101) | ATDPB; DPB|Transcription factor DP |
CRO_T010618 | AT1G10700 (2.00E-129) | PRS3|phosphoribosyl pyrophosphate (PRPP) synthase 3 |
CRO_T015916 | AT3G09880 (0) | ATB' BETA|Protein phosphatase 2A regulatory B subunit family protein |
CRO_T028486 | - | - |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
TreatCFM000228 | PRPP biosynthesis I nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box plasma membrane | details |
TreatCFM000564 | PRPP biosynthesis I xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity phospholipid binding translational initiation response to salt stress Spliceosome precatalytic spliceosome | details |
TreatCFM000649 | malate synthase activity glyoxysome Protein_kinases_phosphatases, PPC:1.6.4: RKF3 Like Kinase 3-hydroxyacyl-CoA dehydrogenase activity Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family glyoxylate cycle unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) fatty acid metabolic process Wnt signaling pathway protein serine/threonine kinase activity regulation of cell shape Endocytosis tricarboxylic acid cycle very long chain fatty acid biosynthesis II Fatty acid metabolism | details |
TreatCFM000993 | PRPP biosynthesis I phenylalanine-tRNA ligase complex nucleoside metabolic process phenylalanyl-tRNA aminoacylation brassinosteroid mediated signaling pathway nucleotide biosynthetic process ribose phosphate diphosphokinase activity phenylalanine-tRNA ligase activity Aminoacyl-tRNA biosynthesis Transcription_related, Transcription regulator: PHD protein dephosphorylation phosphoprotein phosphatase activity | details |
TreatCFM001042 | Transcription_related, Transcription factor: bZIP regulation of signal transduction regulation of gene expression RNA secondary structure unwinding mRNA splicing, via spliceosome | details |
TreatCFM001130 | PRPP biosynthesis I phosphopantetheine binding ribose phosphate diphosphokinase activity nucleoside metabolic process nucleotide biosynthetic process fatty acid biosynthetic process small GTPase mediated signal transduction | details |
TreatCFM001301 | Cytochrome_P450, Cytochrome P450: CYP85A Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family ribonuclease H2 complex fatty acid elongation -- saturated L-histidine biosynthesis L-leucine degradation I PRPP biosynthesis I L-valine degradation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) lipid homeostasis leucine catabolic process nucleoside metabolic process nucleotide biosynthetic process histidine biosynthetic process sodium ion transport RNA catabolic process branched-chain amino acid catabolic process fatty acid beta-oxidation using acyl-CoA dehydrogenase isovaleryl-CoA dehydrogenase activity histidinol dehydrogenase activity Valine, leucine and isoleucine degradation Brassinosteroid biosynthesis RNA-DNA hybrid ribonuclease activity ribose phosphate diphosphokinase activity | details |
TreatCFM001478 | PRPP biosynthesis I Ubiquitin_Proteasome_system, E3: HECT nucleoside metabolic process nucleotide biosynthetic process ribose phosphate diphosphokinase activity Glycerolipid metabolism Ubiquitin mediated proteolysis | details |
TreatCFM001811 | cytoplasm ubiquitin-protein transferase activity MAPK signaling pathway - yeast Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Ubiquitin_Proteasome_system, E3: HECT regulation of shoot system development regulation of signal transduction seed maturation regulation of seed germination Wnt signaling pathway regulation of cell shape Transcription_related, Transcription factor: Trihelix Endocytosis transcription regulatory region DNA binding Ubiquitin mediated proteolysis Transcription_related, Transcription factor: C3H zinc ion binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process peptidyl-serine phosphorylation nucleus nucleolus embryo development ending in seed dormancy | details |
Expression profiles
Show details about module gene expression profiling |