TreatCFM001004's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001861592 | cazy family |
| Various types of N-glycan biosynthesis | 0.002481903 | KEGG pathway |
| Golgi cisterna membrane | 0.003447087 | GO:0032580 |
| polar nucleus | 0.003447087 | GO:0043078 |
| fucosyltransferase activity | 0.006080662 | GO:0008417 |
| fucosylation | 0.006080662 | GO:0036065 |
| L-serine transport | 0.006080662 | GO:0015825 |
| L-serine transmembrane transporter activity | 0.006080662 | GO:0015194 |
| RNA polymerase II transcription cofactor activity | 0.012148391 | GO:0001104 |
| protein-cysteine S-palmitoyltransferase activity | 0.012148391 | GO:0019706 |
| Transcription_related, Transcription factor: WRKY | 0.015141133 | TF family |
| mediator complex | 0.016052214 | GO:0016592 |
| protein glycosylation | 0.024262344 | GO:0006486 |
| defense response to fungus | 0.024262344 | GO:0050832 |
| regulation of transcription from RNA polymerase II promoter | 0.029073552 | GO:0006357 |
| integral component of membrane | 0.029953517 | GO:0016021 |
| Endocytosis | 0.030760952 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000448 | AT1G34220 (2.00E-60) | Regulator of Vps4 activity in the MVB pathway protein |
| CRO_T000805 | AT5G41350 (8.00E-20) | RING/U-box superfamily protein |
| CRO_T009367 | AT4G04780 (2.00E-44) | MED21|mediator 21 |
| CRO_T013826 | AT4G26440 (4.00E-15) | MSP3|MICROSPORE-SPECIFIC PROMOTER 3; WRKY34|WRKY DNA-binding protein 34 |
| CRO_T013865 | AT4G24630 (2.00E-16) | DHHC-type zinc finger family protein |
| CRO_T015922 | AT1G49710 (0) | FUT12|fucosyltransferase 12 |
| CRO_T022966 | AT3G06170 (1.00E-160) | Serinc-domain containing serine and sphingolipid biosynthesis protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000268 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I cellular response to stimulus L-phenylalanine biosynthesis III (cytosolic, plants) L-tyrosine:2-oxoglutarate aminotransferase activity 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process microtubule-based movement biosynthetic process Biosynthesis of amino acids Endocytosis | details |
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM001003 | L-histidine biosynthesis L-serine transport protein metabolic process histidine biosynthetic process histidinol dehydrogenase activity L-serine transmembrane transporter activity chloroplast stroma protein processing protein histidine kinase binding protein-cysteine S-palmitoyltransferase activity phosphatidylinositol binding pollen development Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001314 | telomere tethering at nuclear periphery posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore cytoplasmic filaments L-serine transport RNA export from nucleus structural constituent of nuclear pore L-serine transmembrane transporter activity nucleocytoplasmic transporter activity protein import into nucleus nuclear localization sequence binding RNA transport Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular signal transduction | details |
| TreatCFM001761 | L-serine transmembrane transporter activity transmembrane transport L-serine transport ribosomal small subunit biogenesis cation transport monovalent cation:proton antiporter activity regulation of pH rRNA processing 90S preribosome endomembrane system cytosolic small ribosomal subunit small-subunit processome | details |
Expression profiles
 Show details about module gene expression profiling |