TreatCFM001009's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| metallopeptidase activity | 9.70E-05 | GO:0008237 |
| Glutathione metabolism | 0.000151084 | KEGG pathway |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.000472806 | cazy family |
| alpha-glucan, water dikinase activity | 0.00601837 | GO:0050521 |
| ATPase activator activity | 0.00601837 | GO:0001671 |
| 6-phosphofructokinase complex | 0.006950252 | GO:0005945 |
| cold acclimation | 0.00941471 | GO:0009631 |
| positive regulation of ATPase activity | 0.00941471 | GO:0032781 |
| fructose 6-phosphate metabolic process | 0.00941471 | GO:0006002 |
| glycolytic process through fructose-6-phosphate | 0.00941471 | GO:0061615 |
| proteolysis | 0.00941471 | GO:0006508 |
| starch catabolic process | 0.00941471 | GO:0005983 |
| 6-phosphofructokinase activity | 0.012028027 | GO:0003872 |
| protein histidine kinase activity | 0.012028027 | GO:0004673 |
| peptidyl-histidine phosphorylation | 0.012463697 | GO:0018106 |
| chaperone binding | 0.018027119 | GO:0051087 |
| glycolysis I (from glucose 6-phosphate) | 0.018695195 | plantCyc |
| glycolysis IV (plant cytosol) | 0.018695195 | plantCyc |
| zinc ion binding | 0.035370885 | GO:0008270 |
| response to stress | 0.036415376 | GO:0006950 |
| metal ion binding | 0.038696771 | GO:0046872 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000807 | AT1G63770 (5.00E-115) | Peptidase M1 family protein |
| CRO_T010710 | AT1G10760 (4.00E-62) | SEX1|STARCH EXCESS 1 |
| CRO_T011006 | AT5G06540 (7.00E-45) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T018850 | AT1G63770 (0) | Peptidase M1 family protein |
| CRO_T020416 | AT1G63130 (5.00E-24) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T020670 | AT3G12050 (2.00E-117) | Aha1 domain-containing protein |
| CRO_T021256 | - | - |
| CRO_T029635 | AT5G08500 (5.00E-82) | Transmembrane CLPTM1 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000395 | Circadian rhythm - plant positive regulation of long-day photoperiodism, flowering temperature compensation of the circadian clock response to far red light response to blue light Circadian rhythm response to hydrogen peroxide response to cold nucleoplasm negative regulation of transcription from RNA polymerase II promoter receptor-mediated endocytosis Fluorobenzoate degradation Cytochrome_P450, Cytochrome P450: CYP75B Transcription_related, Transcription factor: NF-X1 Transcription_related, Transcription regulator: Pseudo ARR-B transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding scavenger receptor activity | details |
| TreatCFM000629 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 alpha-glucan, water dikinase activity phosphatidylinositol phosphate binding ATPase activator activity 6-phosphofructokinase complex fructose 6-phosphate metabolic process starch catabolic process positive regulation of ATPase activity phosphatidylinositol-mediated signaling cold acclimation glycolytic process through fructose-6-phosphate peptidyl-histidine phosphorylation 6-phosphofructokinase activity metallopeptidase activity protein histidine kinase activity Transcription_related, Transcription regulator: PHD phosphatidylinositol phosphorylation chaperone binding 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001071 | Cytochrome_P450, Cytochrome P450: CYP704A Ubiquitin_Proteasome_system, DUB: Josephin GABAergic synapse Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I anion transport integral component of membrane vacuolar membrane amino acid transmembrane transport | details |
| TreatCFM001080 | Protein_kinases_phosphatases, PPC:4.5.3: Casein Kinase II Family response to ionizing radiation mitotic recombination strand invasion DNA recombinase assembly protein phosphorylation Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) four-way junction DNA binding ATP binding recombinase activity DNA-dependent ATPase activity endodeoxyribonuclease activity metallopeptidase activity protein serine/threonine kinase activity single-stranded DNA binding double-stranded DNA binding Glutathione metabolism Homologous recombination NF-kappa B signaling pathway Ribosome biogenesis in eukaryotes | details |
| TreatCFM001081 | proteolysis Glutathione metabolism metallopeptidase activity carboxypeptidase activity carbohydrate binding formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001626 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 alpha-glucan, water dikinase activity cytoskeleton organization starch catabolic process cold acclimation protein histidine kinase activity peptidyl-histidine phosphorylation cell wall organization or biogenesis O-acetyltransferase activity Protein processing in endoplasmic reticulum | details |
| TreatCFM001799 | 6-phosphofructokinase complex fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate regulation of membrane potential Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) potassium ion transmembrane transport 6-phosphofructokinase activity voltage-gated potassium channel activity chloroplast | details |
| TreatCFM001921 | chloroplast 6-phosphofructokinase complex glycogen biosynthetic process fructose 6-phosphate metabolic process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay glycolytic process through fructose-6-phosphate glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 post-embryonic development 1,4-alpha-glucan branching enzyme activity 6-phosphofructokinase activity cation binding DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |