TreatCFM001024's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| histidyl-tRNA aminoacylation | 0.002585545 | GO:0006427 |
| D-gluconate catabolic process | 0.002585545 | GO:0046177 |
| pyruvate decarboxylation to acetyl CoA | 0.003099354 | plantCyc |
| gluconokinase activity | 0.003542196 | GO:0046316 |
| histidine-tRNA ligase activity | 0.003542196 | GO:0004821 |
| rRNA primary transcript binding | 0.004721672 | GO:0042134 |
| Carbon metabolism | 0.010971419 | KEGG pathway |
| snoRNA binding | 0.011201053 | GO:0030515 |
| nuclear matrix | 0.015193569 | GO:0016363 |
| Mpp10 complex | 0.015193569 | GO:0034457 |
| rRNA processing | 0.023477958 | GO:0006364 |
| viral nucleocapsid | 0.034365561 | GO:0019013 |
| small-subunit processome | 0.043874277 | GO:0032040 |
| Aminoacyl-tRNA biosynthesis | 0.048484403 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.048484403 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000939 | AT2G16790 (3.00E-36) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T005028 | AT1G63780 (3.00E-83) | IMP4|Ribosomal RNA processing Brix domain protein |
| CRO_T013606 | AT3G46100 (1.00E-37) | ATHRS1|Histidyl-tRNA synthetase 1 |
| CRO_T016666 | AT5G08400 (4.00E-58) | Protein of unknown function (DUF3531) |
| CRO_T017056 | - | - |
| CRO_T022671 | AT2G34590 (0) | Transketolase family protein |
| CRO_T033640 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000323 | adenylosuccinate synthase activity magnesium ion binding ATP phosphoribosyltransferase activity 'de novo' AMP biosynthetic process histidine biosynthetic process L-histidine biosynthesis pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis | details |
| TreatCFM000770 | Photosynthesis glyoxylate cycle isocitrate lyase activity 11-beta-hydroxysteroid dehydrogenase (NADP+) activity transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer rRNA primary transcript binding formation of glycosidic bonds, GlycosylTransferases: GTnc snoRNA binding glyoxysome nuclear matrix photosystem II reaction center Mpp10 complex | details |
| TreatCFM000893 | extracellular space Lysosome cysteine-type endopeptidase activity proteolysis involved in cellular protein catabolic process lagging strand elongation DNA ligation involved in DNA repair protein ADP-ribosylation DNA ligase (ATP) activity rRNA primary transcript binding NAD+ ADP-ribosyltransferase activity nuclear matrix snoRNA binding Mpp10 complex rRNA processing Base excision repair viral nucleocapsid Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM001118 | pyruvate decarboxylation to acetyl CoA auxin efflux transmembrane transporter activity protein histidine kinase binding auxin efflux protein metabolic process auxin homeostasis auxin-activated signaling pathway auxin polar transport pollen development Transcription_related, Transcription factor: bHLH | details |
| TreatCFM001834 | snRNA transcription protein transmembrane transport protein localization to organelle protein channel activity GTPase activator activity Endocytosis peptidase activity positive regulation of GTPase activity pollen development embryo development ending in seed dormancy | details |
| TreatCFM002000 | snRNA transcription tubulin complex assembly protein transmembrane transport post-chaperonin tubulin folding pathway protein localization to organelle beta-tubulin binding microtubule cytoskeleton organization protein channel activity GTPase activator activity positive regulation of GTPase activity peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |