TreatCFM000893's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| extracellular space | 0.00023351 | GO:0005615 |
| Lysosome | 0.00023351 | KEGG pathway |
| cysteine-type endopeptidase activity | 0.000293764 | GO:0004197 |
| proteolysis involved in cellular protein catabolic process | 0.001152881 | GO:0051603 |
| lagging strand elongation | 0.005394522 | GO:0006273 |
| DNA ligation involved in DNA repair | 0.005394522 | GO:0051103 |
| protein ADP-ribosylation | 0.005394522 | GO:0006471 |
| DNA ligase (ATP) activity | 0.006741758 | GO:0003910 |
| rRNA primary transcript binding | 0.006741758 | GO:0042134 |
| NAD+ ADP-ribosyltransferase activity | 0.006741758 | GO:0003950 |
| nuclear matrix | 0.010006496 | GO:0016363 |
| snoRNA binding | 0.010237938 | GO:0030515 |
| Mpp10 complex | 0.010717919 | GO:0034457 |
| rRNA processing | 0.022042193 | GO:0006364 |
| Base excision repair | 0.02332176 | KEGG pathway |
| viral nucleocapsid | 0.029080474 | GO:0019013 |
| Ribosome biogenesis in eukaryotes | 0.036524733 | KEGG pathway |
| small-subunit processome | 0.04123745 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005028 | AT1G63780 (3.00E-83) | IMP4|Ribosomal RNA processing Brix domain protein |
| CRO_T007049 | AT1G22110 (3.00E-10) | structural constituent of ribosome |
| CRO_T007085 | AT5G50260 (7.00E-135) | CEP1|cysteine endopeptidase 1 |
| CRO_T014770 | AT3G28020 (6.00E-12) | BEST Arabidopsis thaliana protein match is: DNA binding |
| CRO_T020028 | AT3G54940 (3.00E-148) | Papain family cysteine protease |
| CRO_T023104 | - | - |
| CRO_T027103 | AT5G22470 (0) | NAD+ ADP-ribosyltransferases; NAD+ ADP-ribosyltransferases |
| CRO_T028414 | AT5G01300 (1.00E-40) | PEBP (phosphatidylethanolamine-binding protein) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000343 | cellular metabolic process Photosynthesis intracellular part | details |
| TreatCFM000625 | Transcription_related, Transcription factor: AP2 Transcription_related, Transcription factor: NF-YC | details |
| TreatCFM000770 | Photosynthesis glyoxylate cycle isocitrate lyase activity 11-beta-hydroxysteroid dehydrogenase (NADP+) activity transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer rRNA primary transcript binding formation of glycosidic bonds, GlycosylTransferases: GTnc snoRNA binding glyoxysome nuclear matrix photosystem II reaction center Mpp10 complex | details |
| TreatCFM000894 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: M-type | details |
| TreatCFM001024 | histidyl-tRNA aminoacylation D-gluconate catabolic process pyruvate decarboxylation to acetyl CoA gluconokinase activity histidine-tRNA ligase activity rRNA primary transcript binding Carbon metabolism snoRNA binding nuclear matrix Mpp10 complex rRNA processing viral nucleocapsid small-subunit processome Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |