TreatCFM001118's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyruvate decarboxylation to acetyl CoA | 0.003099354 | plantCyc |
| auxin efflux transmembrane transporter activity | 0.012978843 | GO:0010329 |
| protein histidine kinase binding | 0.012978843 | GO:0043424 |
| auxin efflux | 0.017543724 | GO:0010315 |
| protein metabolic process | 0.017543724 | GO:0019538 |
| auxin homeostasis | 0.017543724 | GO:0010252 |
| auxin-activated signaling pathway | 0.036737458 | GO:0009734 |
| auxin polar transport | 0.036737458 | GO:0009926 |
| pollen development | 0.036737458 | GO:0009555 |
| Transcription_related, Transcription factor: bHLH | 0.049916693 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003301 | AT5G54680 (2.00E-71) | bHLH105|basic Helix-Loop-Helix 105; ILR3|iaa-leucine resistant3 |
| CRO_T012849 | - | - |
| CRO_T013308 | AT1G14770 (1.00E-10) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T020439 | AT5G47910 (2.00E-18) | RBOHD|respiratory burst oxidase homologue D |
| CRO_T022671 | AT2G34590 (0) | Transketolase family protein |
| CRO_T024391 | AT5G15100 (1.00E-98) | ATPIN8|PIN-FORMED 8 |
| CRO_T026596 | AT4G12060 (2.00E-67) | Double Clp-N motif protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000323 | adenylosuccinate synthase activity magnesium ion binding ATP phosphoribosyltransferase activity 'de novo' AMP biosynthetic process histidine biosynthetic process L-histidine biosynthesis pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis | details |
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM000747 | L-histidine biosynthesis adenylosuccinate synthase activity histidinol dehydrogenase activity 'de novo' AMP biosynthetic process endoplasmic reticulum tubular network organization adenosine ribonucleotides de novo biosynthesis endoplasmic reticulum tubular network histidine biosynthetic process Group II intron splicing protein metabolic process | details |
| TreatCFM000998 | L-leucine biosynthesis DNA-3-methyladenine glycosylase activity hydro-lyase activity protein histidine kinase binding protein metabolic process base-excision repair 2-Oxocarboxylic acid metabolism Base excision repair | details |
| TreatCFM001003 | L-histidine biosynthesis L-serine transport protein metabolic process histidine biosynthetic process histidinol dehydrogenase activity L-serine transmembrane transporter activity chloroplast stroma protein processing protein histidine kinase binding protein-cysteine S-palmitoyltransferase activity phosphatidylinositol binding pollen development Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001024 | histidyl-tRNA aminoacylation D-gluconate catabolic process pyruvate decarboxylation to acetyl CoA gluconokinase activity histidine-tRNA ligase activity rRNA primary transcript binding Carbon metabolism snoRNA binding nuclear matrix Mpp10 complex rRNA processing viral nucleocapsid small-subunit processome Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes | details |
| TreatCFM001294 | phosphatidylinositol binding regulation of barrier septum assembly hypoxanthine salvage inosine biosynthetic process adenosine catabolic process histidinol dehydrogenase activity flavin-linked sulfhydryl oxidase activity regulation of ruffle assembly Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription regulator: mTERF ATPase binding adenosine deaminase activity detoxification of reactive carbonyls in chloroplasts L-histidine biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis protein metabolic process chloroplast fission histidine biosynthetic process endosome organization trichome branching protein histidine kinase binding | details |
| TreatCFM001328 | Nucleotide excision repair 1,3-beta-D-glucan synthase activity protein histidine kinase binding DNA-3-methyladenine glycosylase activity Base excision repair (1->3)-beta-D-glucan biosynthetic process protein metabolic process base-excision repair 1,3-beta-D-glucan synthase complex | details |
| TreatCFM001678 | Nucleotide excision repair Base excision repair beta-tubulin binding DNA-3-methyladenine glycosylase activity protein histidine kinase binding Group II intron splicing protein metabolic process tubulin complex assembly post-chaperonin tubulin folding pathway microtubule cytoskeleton organization base-excision repair cytochrome complex assembly GTPase activator activity positive regulation of GTPase activity | details |
| TreatCFM001721 | glycosyl compound metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-glucosidase activity Transcription_related, Transcription factor: bHLH Starch and sucrose metabolism protein dimerization activity | details |
| TreatCFM001967 | protein transmembrane transport protein localization to organelle snRNA transcription Base excision repair DNA-3-methyladenine glycosylase activity protein channel activity base-excision repair isoflavonoid biosynthesis II benzoate biosynthesis I (CoA-dependent, β-oxidative) peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |