TreatCFM001041's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| NEDD8-specific protease activity | 0.007507756 | GO:0019784 |
| structural constituent of cell wall | 0.007507756 | GO:0005199 |
| ATP binding | 0.0132144 | GO:0005524 |
| protein serine/threonine kinase activity | 0.0132144 | GO:0004674 |
| Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase | 0.017195752 | kinase family |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.017195752 | kinase family |
| Transcription_related, Transcription factor: Trihelix | 0.017195752 | TF family |
| cullin deneddylation | 0.017981507 | GO:0010388 |
| positive regulation of G2/M transition of mitotic cell cycle | 0.017981507 | GO:0010971 |
| COP9 signalosome | 0.018883339 | GO:0008180 |
| proteasome complex | 0.020047544 | GO:0000502 |
| protein phosphorylation | 0.024147772 | GO:0006468 |
| regulation of gene expression | 0.024147772 | GO:0010468 |
| RNA secondary structure unwinding | 0.036579055 | GO:0010501 |
| mRNA splicing, via spliceosome | 0.036579055 | GO:0000398 |
| ATP-dependent RNA helicase activity | 0.04705214 | GO:0004004 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001796 | AT1G20920 (0) | RCF1|regulator of CBF gene expression 1 |
| CRO_T009278 | AT5G38560 (0) | AtPERK8|proline-rich extensin-like receptor kinase 8 |
| CRO_T011887 | AT5G66880 (1.00E-25) | SNRK2-3|SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; SNRK2.3|sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 |
| CRO_T012488 | - | - |
| CRO_T016069 | AT5G42970 (8.00E-60) | COP14|CONSTITUTIVE PHOTOMORPHOGENIC 14; COP8|CONSTITUTIVE PHOTOMORPHOGENIC 8; CSN4|COP9 SIGNALOSOME SUBUNIT 4; EMB134|EMBRYO DEFECTIVE 134; FUS4|FUSCA 4; FUS8|FUSCA 8 |
| CRO_T020208 | AT1G80000 (5.00E-59) | CASC3/Barentsz eIF4AIII binding |
| CRO_T029958 | AT3G24860 (3.00E-20) | Homeodomain-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000426 | regulation of gene expression cell wall organization or biogenesis mRNA splicing, via spliceosome RNA secondary structure unwinding Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box O-acetyltransferase activity ATP-dependent RNA helicase activity | details |
| TreatCFM001042 | Transcription_related, Transcription factor: bZIP regulation of signal transduction regulation of gene expression RNA secondary structure unwinding mRNA splicing, via spliceosome | details |
| TreatCFM001492 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc alpha-1,3-mannosyltransferase activity galactoside 2-alpha-L-fucosyltransferase activity mannosylglycoprotein endo-beta-mannosidase activity ceramide metabolic process L-amino acid transport fucosylation nucleocytoplasmic transport xyloglucan biosynthetic process mannosylation L-alpha-amino acid transmembrane transport hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides plant-type cell wall biogenesis fatty acid β-oxidation II (peroxisome) protein N-glycosylation (eukaryotic, high mannose) unsaturated, even numbered fatty acid β-oxidation L-amino acid transmembrane transporter activity MicroRNAs in cancer translation | details |
| TreatCFM001867 | Transcription_related, Transcription factor: Trihelix cytosolic small ribosomal subunit heterocyclic compound binding organic cyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |