TreatCFM001042's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: bZIP | 0.008246648 | TF family |
| regulation of signal transduction | 0.028844756 | GO:0009966 |
| regulation of gene expression | 0.028844756 | GO:0010468 |
| RNA secondary structure unwinding | 0.037095776 | GO:0010501 |
| mRNA splicing, via spliceosome | 0.037095776 | GO:0000398 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001796 | AT1G20920 (0) | RCF1|regulator of CBF gene expression 1 |
| CRO_T007216 | AT3G49601 (2.00E-36) | unknown protein |
| CRO_T008139 | AT4G10080 (2.00E-18) | unknown protein |
| CRO_T014353 | AT5G44080 (8.00E-27) | Basic-leucine zipper (bZIP) transcription factor family protein |
| CRO_T020208 | AT1G80000 (5.00E-59) | CASC3/Barentsz eIF4AIII binding |
| CRO_T026709 | - | - |
| CRO_T029893 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000217 | tubulin binding polysome prefoldin complex Transcription_related, Transcription factor: bZIP tubulin complex assembly microtubule-based process | details |
| TreatCFM000350 | Transcription_related, Transcription factor: bZIP regulation of signal transduction Plant hormone signal transduction Spliceosome | details |
| TreatCFM000426 | regulation of gene expression cell wall organization or biogenesis mRNA splicing, via spliceosome RNA secondary structure unwinding Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box O-acetyltransferase activity ATP-dependent RNA helicase activity | details |
| TreatCFM000665 | tubulin binding polysome prefoldin complex large ribosomal subunit rRNA binding preribosome, large subunit precursor tubulin complex assembly cytoplasmic translation microtubule-based process ribosome biogenesis cytosolic large ribosomal subunit | details |
| TreatCFM001011 | PRPP biosynthesis I Transcription_related, Transcription factor: E2F-DP TGF-beta signaling pathway regulation of protein phosphatase type 2A activity nucleotide biosynthetic process nucleoside metabolic process Cell cycle ribose phosphate diphosphokinase activity RNA polymerase II transcription factor activity, sequence-specific DNA binding protein phosphatase type 2A regulator activity protein phosphatase type 2A complex transcription factor complex regulation of transcription from RNA polymerase II promoter RNA secondary structure unwinding mRNA surveillance pathway | details |
| TreatCFM001041 | NEDD8-specific protease activity structural constituent of cell wall ATP binding protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: Trihelix cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle COP9 signalosome proteasome complex protein phosphorylation regulation of gene expression RNA secondary structure unwinding mRNA splicing, via spliceosome ATP-dependent RNA helicase activity | details |
| TreatCFM001811 | cytoplasm ubiquitin-protein transferase activity MAPK signaling pathway - yeast Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Ubiquitin_Proteasome_system, E3: HECT regulation of shoot system development regulation of signal transduction seed maturation regulation of seed germination Wnt signaling pathway regulation of cell shape Transcription_related, Transcription factor: Trihelix Endocytosis transcription regulatory region DNA binding Ubiquitin mediated proteolysis Transcription_related, Transcription factor: C3H zinc ion binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process peptidyl-serine phosphorylation nucleus nucleolus embryo development ending in seed dormancy | details |
| TreatCFM001889 | regulation of signal transduction ubiquitin-protein transferase activity heterocyclic compound binding organic cyclic compound binding transferase activity, transferring acyl groups zinc ion binding | details |
Expression profiles
 Show details about module gene expression profiling |