TreatCFM001065's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| retrograde protein transport, ER to cytosol | 0.006436646 | GO:0030970 |
| 2-oxoglutarate decarboxylation to succinyl-CoA | 0.007378433 | plantCyc |
| 2-oxoisovalerate decarboxylation to isobutanoyl-CoA | 0.007378433 | plantCyc |
| glycine cleavage | 0.007378433 | plantCyc |
| pyruvate decarboxylation to acetyl CoA | 0.007378433 | plantCyc |
| dihydrolipoyl dehydrogenase activity | 0.012871389 | GO:0004148 |
| endoplasmic reticulum lumen | 0.026050352 | GO:0005788 |
| microtubule-severing ATPase activity | 0.026773818 | GO:0008568 |
| ATP-dependent peptidase activity | 0.026773818 | GO:0004176 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.030535686 | GO:0030433 |
| metalloendopeptidase activity | 0.033692667 | GO:0004222 |
| response to salt stress | 0.040885331 | GO:0009651 |
| translational initiation | 0.040885331 | GO:0006413 |
| cell | 0.048097106 | GO:0005623 |
| cell redox homeostasis | 0.048651797 | GO:0045454 |
| translation initiation factor activity | 0.049924731 | GO:0003743 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004155 | AT4G30690 (2.00E-32) | Translation initiation factor 3 protein |
| CRO_T006670 | AT5G15250 (5.00E-24) | FTSH6|FTSH protease 6 |
| CRO_T011528 | - | - |
| CRO_T026409 | AT3G16950 (0) | LPD1|lipoamide dehydrogenase 1 |
| CRO_T028159 | - | - |
| CRO_T030246 | AT5G35080 (4.00E-97) | OS9|OS9 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000530 | 2-oxoglutarate decarboxylation to succinyl-CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA cytoplasmic translational termination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly plastid translation positive regulation of proteasomal protein catabolic process cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process dihydrolipoyl dehydrogenase activity TBP-class protein binding proteasome-activating ATPase activity ribosomal large subunit binding translational elongation Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: C2H2 cell Proteasome translation elongation factor activity cell redox homeostasis | details |
| TreatCFM001064 | retrograde protein transport, ER to cytosol endoplasmic reticulum lumen monolayer-surrounded lipid storage body lipid storage sexual reproduction ER-associated ubiquitin-dependent protein catabolic process translation initiation factor activity response to salt stress translational initiation Protein processing in endoplasmic reticulum | details |
| TreatCFM001105 | Photosynthesis - antenna proteins photosynthesis light reactions pigment binding cyclin-dependent protein serine/threonine kinase activity photosynthesis, light harvesting in photosystem I lipid storage regulation of cell cycle sexual reproduction response to light stimulus monolayer-surrounded lipid storage body carbohydrate transport protein-chromophore linkage chlorophyll binding plastoglobule photosystem I integral component of membrane | details |
| TreatCFM001158 | photosynthesis light reactions photosynthesis, light harvesting in photosystem I lipid storage sexual reproduction Photosynthesis - antenna proteins pigment binding response to light stimulus protein-chromophore linkage monolayer-surrounded lipid storage body chlorophyll binding photosystem I plastoglobule | details |
| TreatCFM001503 | retrograde protein transport, ER to cytosol Transcription_related, Transcription factor: GRF endoplasmic reticulum lumen ER-associated ubiquitin-dependent protein catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc response to salt stress lipid binding Transcription_related, Transcription factor: HB Protein processing in endoplasmic reticulum sequence-specific DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |