TreatCFM001503's detailed annotation
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
retrograde protein transport, ER to cytosol | 0.002955301 | GO:0030970 |
Transcription_related, Transcription factor: GRF | 0.006824224 | TF family |
endoplasmic reticulum lumen | 0.00974673 | GO:0005788 |
ER-associated ubiquitin-dependent protein catabolic process | 0.014020058 | GO:0030433 |
formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.0194503 | cazy family |
response to salt stress | 0.022094451 | GO:0009651 |
lipid binding | 0.022804843 | GO:0008289 |
Transcription_related, Transcription factor: HB | 0.024250095 | TF family |
Protein processing in endoplasmic reticulum | 0.037871877 | KEGG pathway |
sequence-specific DNA binding | 0.046991536 | GO:0043565 |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T012531 | AT2G22840 (6.00E-30) | AtGRF1|growth-regulating factor 1 |
CRO_T014216 | AT1G17920 (0) | HDG12|homeodomain GLABROUS 12 |
CRO_T021976 | AT4G09060 (8.00E-77) | unknown protein |
CRO_T030246 | AT5G35080 (4.00E-97) | OS9|OS9 |
CRO_T031738 | AT5G12460 (1.00E-110) | Protein of unknown function (DUF604) |
CRO_T032957 | - | - |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
TreatCFM000838 | Cytochrome_P450, Cytochrome P450: CYP77B L-carnitine biosynthesis vernolate biosynthesis I Transcription_related, Transcription factor: GRF Transcription_related, Transcription factor: SBP poly-hydroxy fatty acids biosynthesis long-chain-alcohol O-fatty-acyltransferase activity diacylglycerol O-acyltransferase activity triglyceride biosynthetic process diacylglycerol and triacylglycerol biosynthesis integral component of membrane plasma membrane secondary metabolite biosynthetic process response to stress | details |
TreatCFM001064 | retrograde protein transport, ER to cytosol endoplasmic reticulum lumen monolayer-surrounded lipid storage body lipid storage sexual reproduction ER-associated ubiquitin-dependent protein catabolic process translation initiation factor activity response to salt stress translational initiation Protein processing in endoplasmic reticulum | details |
TreatCFM001065 | retrograde protein transport, ER to cytosol 2-oxoglutarate decarboxylation to succinyl-CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA dihydrolipoyl dehydrogenase activity endoplasmic reticulum lumen microtubule-severing ATPase activity ATP-dependent peptidase activity ER-associated ubiquitin-dependent protein catabolic process metalloendopeptidase activity response to salt stress translational initiation cell cell redox homeostasis translation initiation factor activity | details |
TreatCFM001235 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: GRF baicalein degradation (hydrogen peroxide detoxification) 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Propanoate metabolism oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Transcription_related, Transcription factor: HB | details |
TreatCFM001286 | Transcription_related, Transcription factor: C2C2-GATA Endocytosis | details |
TreatCFM001345 | Propanoate metabolism phosphatidylinositol-3-phosphate binding phosphatidylinositol-3,5-bisphosphate binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor nucleophagy protein localization to pre-autophagosomal structure mitophagy protein lipidation 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Transcription_related, Transcription factor: GRF formation of glycosidic bonds, GlycosylTransferases: GTnc pre-autophagosomal structure membrane extrinsic component of membrane | details |
Expression profiles
Show details about module gene expression profiling |