TreatCFM001090's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| diacylglycerol biosynthesis (PUFA enrichment in oilseed) | 0.000531915 | plantCyc |
| DNA strand elongation involved in mitotic DNA replication | 0.001950499 | GO:1902983 |
| Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III | 0.002127502 | kinase family |
| 3'-5' DNA helicase activity | 0.005849767 | GO:0043138 |
| GINS complex | 0.010424761 | GO:0000811 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.015362977 | ubs family |
| plant-type cell wall organization | 0.017995516 | GO:0009664 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007334 | AT2G36570 (7.00E-74) | PXC1|PXY/TDR-correlated 1 |
| CRO_T022678 | AT2G28950 (2.00E-110) | ATEXP6|TEXPANSIN 6; ATEXPA6|expansin A6 |
| CRO_T025966 | AT5G60490 (1.00E-22) | FLA12|FASCICLIN-like arabinogalactan-protein 12 |
| CRO_T029549 | AT3G50780 (4.00E-96) | |
| CRO_T030018 | AT3G15820 (2.00E-49) | ROD1|REDUCED OLEATE DESATURATION 1 |
| CRO_T031691 | AT1G80190 (2.00E-40) | PSF1|partner of SLD five 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000496 | homogalacturonan biosynthesis 5'-3' exodeoxyribonuclease activity protection from non-homologous end joining at telomere regulation of sequestering of zinc ion response to zinc ion interstrand cross-link repair double-strand break repair via nonhomologous end joining pectin biosynthetic process nuclear chromosome, telomeric region damaged DNA binding zinc ion transmembrane transporter activity polygalacturonate 4-alpha-galacturonosyltransferase activity zinc II ion transmembrane transport formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB Golgi membrane | details |
| TreatCFM001348 | ubiquitin binding cellular component organization Plant-pathogen interaction Protein export plant-type cell wall organization hydrogen peroxide catabolic process Phenylpropanoid biosynthesis cellular oxidant detoxification response to oxidative stress | details |
| TreatCFM001377 | homogalacturonan biosynthesis response to zinc ion positive regulation of histone methylation regulation of shoot system development system development regulation of RNA metabolic process regulation of sequestering of zinc ion polygalacturonate 4-alpha-galacturonosyltransferase activity zinc ion transmembrane transporter activity pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB regulation of gene expression zinc II ion transmembrane transport response to stimulus single-organism cellular process | details |
Expression profiles
 Show details about module gene expression profiling |