TreatCFM001377's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homogalacturonan biosynthesis | 0.003895237 | plantCyc |
| response to zinc ion | 0.009899474 | GO:0010043 |
| positive regulation of histone methylation | 0.009899474 | GO:0031062 |
| regulation of shoot system development | 0.009899474 | GO:0048831 |
| system development | 0.009899474 | GO:0048731 |
| regulation of RNA metabolic process | 0.009899474 | GO:0051252 |
| regulation of sequestering of zinc ion | 0.009899474 | GO:0061088 |
| polygalacturonate 4-alpha-galacturonosyltransferase activity | 0.011197978 | GO:0047262 |
| zinc ion transmembrane transporter activity | 0.011197978 | GO:0005385 |
| pectin biosynthetic process | 0.012252869 | GO:0045489 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.015362977 | cazy family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.015362977 | ubs family |
| regulation of gene expression | 0.01566259 | GO:0010468 |
| zinc II ion transmembrane transport | 0.016848333 | GO:0071577 |
| response to stimulus | 0.026994663 | GO:0050896 |
| single-organism cellular process | 0.028119443 | GO:0044763 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004648 | AT1G79520 (1.00E-100) | Cation efflux family protein |
| CRO_T011815 | AT3G58790 (1.00E-170) | GAUT15|galacturonosyltransferase 15 |
| CRO_T014112 | AT3G23380 (1.00E-14) | RIC5|ROP-interactive CRIB motif-containing protein 5 |
| CRO_T021068 | AT5G55390 (2.00E-108) | EDM2|ENHANCED DOWNY MILDEW 2 |
| CRO_T029549 | AT3G50780 (4.00E-96) | |
| CRO_T031393 | AT2G30010 (5.00E-131) | TBL45|TRICHOME BIREFRINGENCE-LIKE 45 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000496 | homogalacturonan biosynthesis 5'-3' exodeoxyribonuclease activity protection from non-homologous end joining at telomere regulation of sequestering of zinc ion response to zinc ion interstrand cross-link repair double-strand break repair via nonhomologous end joining pectin biosynthetic process nuclear chromosome, telomeric region damaged DNA binding zinc ion transmembrane transporter activity polygalacturonate 4-alpha-galacturonosyltransferase activity zinc II ion transmembrane transport formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB Golgi membrane | details |
| TreatCFM001012 | alanine-glyoxylate transaminase activity Alanine, aspartate and glutamate metabolism identical protein binding pyridoxal phosphate binding glycine biosynthesis III arginine catabolic process to glutamate homogalacturonan biosynthesis pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB mitochondrion | details |
| TreatCFM001090 | diacylglycerol biosynthesis (PUFA enrichment in oilseed) DNA strand elongation involved in mitotic DNA replication Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III 3'-5' DNA helicase activity GINS complex Ubiquitin_Proteasome_system, E3 adaptor: BTB plant-type cell wall organization | details |
| TreatCFM001094 | Legionellosis osmosensor activity homogalacturonan degradation histidine phosphotransfer kinase activity stomatal complex patterning positive regulation of histone methylation regulation of RNA metabolic process regulation of shoot system development system development seed maturation response to osmotic stress regulation of gene expression aspartyl esterase activity pectinesterase activity metal ion binding phosphorelay sensor kinase activity pectinesterase inhibitor activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: Orphans protein processing signal transduction by protein phosphorylation response to water deprivation cell wall modification response to stimulus negative regulation of catalytic activity phosphorelay signal transduction system single-organism cellular process pectin catabolic process | details |
| TreatCFM001847 | Adherens junction regulation of shoot system development positive regulation of histone methylation system development regulation of RNA metabolic process regulation of gene expression single-organism cellular process response to stimulus translational initiation RNA transport translation initiation factor activity | details |
Expression profiles
 Show details about module gene expression profiling |