TreatCFM000496's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homogalacturonan biosynthesis | 0.003895237 | plantCyc |
| 5'-3' exodeoxyribonuclease activity | 0.006072695 | GO:0035312 |
| protection from non-homologous end joining at telomere | 0.006936134 | GO:0031848 |
| regulation of sequestering of zinc ion | 0.006936134 | GO:0061088 |
| response to zinc ion | 0.006936134 | GO:0010043 |
| interstrand cross-link repair | 0.006936134 | GO:0036297 |
| double-strand break repair via nonhomologous end joining | 0.006936134 | GO:0006303 |
| pectin biosynthetic process | 0.008346583 | GO:0045489 |
| nuclear chromosome, telomeric region | 0.008772705 | GO:0000784 |
| damaged DNA binding | 0.012126559 | GO:0003684 |
| zinc ion transmembrane transporter activity | 0.012126559 | GO:0005385 |
| polygalacturonate 4-alpha-galacturonosyltransferase activity | 0.012126559 | GO:0047262 |
| zinc II ion transmembrane transport | 0.012648106 | GO:0071577 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.028165457 | cazy family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.028165457 | ubs family |
| Golgi membrane | 0.031065353 | GO:0000139 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004648 | AT1G79520 (1.00E-100) | Cation efflux family protein |
| CRO_T011815 | AT3G58790 (1.00E-170) | GAUT15|galacturonosyltransferase 15 |
| CRO_T012619 | AT1G27410 (7.00E-119) | DNA repair metallo-beta-lactamase family protein |
| CRO_T014112 | AT3G23380 (1.00E-14) | RIC5|ROP-interactive CRIB motif-containing protein 5 |
| CRO_T029549 | AT3G50780 (4.00E-96) | |
| CRO_T030627 | AT3G03550 (6.00E-15) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000267 | protection from non-homologous end joining at telomere interstrand cross-link repair double-strand break repair via nonhomologous end joining Transcriptional misregulation in cancers 5'-3' exodeoxyribonuclease activity Glycerophospholipid metabolism phosphatidylcholine acyl editing phospholipases phospholipid remodeling (phosphatidylcholine, yeast) negative regulation of catalytic activity pectinesterase inhibitor activity DNA binding damaged DNA binding pectinesterase activity | details |
| TreatCFM001012 | alanine-glyoxylate transaminase activity Alanine, aspartate and glutamate metabolism identical protein binding pyridoxal phosphate binding glycine biosynthesis III arginine catabolic process to glutamate homogalacturonan biosynthesis pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB mitochondrion | details |
| TreatCFM001090 | diacylglycerol biosynthesis (PUFA enrichment in oilseed) DNA strand elongation involved in mitotic DNA replication Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III 3'-5' DNA helicase activity GINS complex Ubiquitin_Proteasome_system, E3 adaptor: BTB plant-type cell wall organization | details |
| TreatCFM001377 | homogalacturonan biosynthesis response to zinc ion positive regulation of histone methylation regulation of shoot system development system development regulation of RNA metabolic process regulation of sequestering of zinc ion polygalacturonate 4-alpha-galacturonosyltransferase activity zinc ion transmembrane transporter activity pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB regulation of gene expression zinc II ion transmembrane transport response to stimulus single-organism cellular process | details |
Expression profiles
 Show details about module gene expression profiling |