TreatCFM001113's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleosome assembly | 0.003718455 | GO:0006334 |
| nucleosome | 0.016984843 | GO:0000786 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009785 | - | - |
| CRO_T010759 | - | - |
| CRO_T011365 | - | - |
| CRO_T013564 | AT1G12150 (3.00E-05) | Plant protein of unknown function (DUF827) |
| CRO_T021113 | AT2G30620 (3.00E-17) | winged-helix DNA-binding transcription factor family protein |
| CRO_T025304 | AT3G25210 (4.00E-14) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000586 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation removal of superoxide radicals maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) translational initiation amino acid transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: DWD Cul4-RING E3 ubiquitin ligase complex | details |
| TreatCFM000590 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction Transcription_related, Transcription factor: M-type MAP kinase kinase activity | details |
| TreatCFM001404 | cyanate degradation cyanate catabolic process negative regulation of MAP kinase activity negative regulation of microtubule depolymerization photorespiration microtubule plus-end binding cyanate hydratase activity cortical microtubule organization cell cortex spindle microtubule nucleus oxidized purine nucleobase lesion DNA N-glycosylase activity protein stabilization MAPK signaling pathway Nitrogen metabolism mitotic nuclear division phragmoplast cell growth response to hormone cytosol damaged DNA binding phosphatase activity cytosolic small ribosomal subunit | details |
| TreatCFM001721 | glycosyl compound metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-glucosidase activity Transcription_related, Transcription factor: bHLH Starch and sucrose metabolism protein dimerization activity | details |
| TreatCFM002031 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process cullin family protein binding S-adenosylmethionine-dependent methyltransferase activity methylation | details |
Expression profiles
 Show details about module gene expression profiling |