TreatCFM001404's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cyanate degradation | 0.001418419 | plantCyc |
| cyanate catabolic process | 0.006515544 | GO:0009440 |
| negative regulation of MAP kinase activity | 0.006515544 | GO:0043407 |
| negative regulation of microtubule depolymerization | 0.006515544 | GO:0007026 |
| photorespiration | 0.007432079 | plantCyc |
| microtubule plus-end binding | 0.007852993 | GO:0051010 |
| cyanate hydratase activity | 0.007852993 | GO:0008824 |
| cortical microtubule organization | 0.012212855 | GO:0043622 |
| cell cortex | 0.013698374 | GO:0005938 |
| spindle microtubule | 0.013698374 | GO:0005876 |
| nucleus | 0.013698374 | GO:0005634 |
| oxidized purine nucleobase lesion DNA N-glycosylase activity | 0.015699488 | GO:0008534 |
| protein stabilization | 0.017579236 | GO:0050821 |
| MAPK signaling pathway | 0.021625506 | KEGG pathway |
| Nitrogen metabolism | 0.021625506 | KEGG pathway |
| mitotic nuclear division | 0.022776117 | GO:0007067 |
| phragmoplast | 0.02309211 | GO:0009524 |
| cell growth | 0.025089828 | GO:0016049 |
| response to hormone | 0.02682108 | GO:0009725 |
| cytosol | 0.034470368 | GO:0005829 |
| damaged DNA binding | 0.037608693 | GO:0003684 |
| phosphatase activity | 0.037608693 | GO:0016791 |
| cytosolic small ribosomal subunit | 0.040925495 | GO:0022627 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000900 | AT2G31610 (3.00E-114) | Ribosomal protein S3 family protein |
| CRO_T004430 | AT2G33210 (0) | HSP60-2|heat shock protein 60-2 |
| CRO_T006324 | AT4G02560 (3.00E-116) | LD|luminidependens |
| CRO_T015398 | AT2G33760 (4.00E-26) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T017303 | AT5G47760 (4.00E-97) | ATPGLP2|2-phosphoglycolate phosphatase 2 |
| CRO_T025304 | AT3G25210 (4.00E-14) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T025614 | AT3G23490 (1.00E-54) | CYN|cyanase |
| CRO_T026209 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000590 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction Transcription_related, Transcription factor: M-type MAP kinase kinase activity | details |
| TreatCFM001113 | nucleosome assembly nucleosome | details |
| TreatCFM001155 | regulation of root development response to extracellular stimulus lateral root development organ morphogenesis fruit development defense response to fungus, incompatible interaction reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity glucan endo-1,3-beta-D-glucosidase activity oxidized purine nucleobase lesion DNA N-glycosylase activity Ras signaling pathway jasmonic acid mediated signaling pathway damaged DNA binding response to ethylene adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF cytosolic small ribosomal subunit DNA repair small GTPase mediated signal transduction | details |
| TreatCFM001382 | pyrimidine ribonucleosides salvage I Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I intracellular positive regulation of autophagy RNA biosynthetic process activation of MAPKK activity oxidized purine nucleobase lesion DNA N-glycosylase activity MAPK cascade cytosolic small ribosomal subunit MAP kinase kinase kinase activity damaged DNA binding small GTPase mediated signal transduction DNA repair | details |
| TreatCFM001877 | cyanate degradation S-methyl-L-methionine cycle nuclear pore transmembrane ring Selenocompound metabolism establishment of spindle pole body localization to nuclear envelope spindle pole body duplication cyanate catabolic process Nitrogen metabolism nuclear pore organization selenium compound metabolic process system development S-adenosylmethionine metabolic process pseudouridine synthesis cyanate hydratase activity cytosol vindoline and vinblastine biosynthesis transaminase activity structural constituent of nuclear pore pseudouridine synthase activity biosynthetic process | details |
| TreatCFM001961 | exon-exon junction complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA splicing protein processing oxidized purine nucleobase lesion DNA N-glycosylase activity glucan endo-1,3-beta-D-glucosidase activity cytosolic small ribosomal subunit damaged DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |