TreatCFM000586's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| MAPK signaling pathway - fly | 0.004961899 | KEGG pathway |
| reactive oxygen species degradation | 0.005665465 | plantCyc |
| superoxide radicals degradation | 0.005665465 | plantCyc |
| removal of superoxide radicals | 0.044083917 | GO:0019430 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.044083917 | GO:0000462 |
| translational initiation | 0.044083917 | GO:0006413 |
| amino acid transmembrane transport | 0.044083917 | GO:0003333 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.046777058 | ubs family |
| Cul4-RING E3 ubiquitin ligase complex | 0.047153966 | GO:0080008 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000698 | AT3G19760 (0) | EIF4A-III|eukaryotic initiation factor 4A-III |
| CRO_T000876 | AT3G10920 (8.00E-83) | ATMSD1|ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1; MEE33|MATERNAL EFFECT EMBRYO ARREST 33; MSD1|manganese superoxide dismutase 1 |
| CRO_T003659 | AT2G39805 (1.00E-90) | Integral membrane Yip1 family protein |
| CRO_T006749 | - | - |
| CRO_T006921 | - | - |
| CRO_T009785 | - | - |
| CRO_T011997 | AT5G40780 (1.00E-20) | LHT1|lysine histidine transporter 1 |
| CRO_T021494 | AT5G42760 (3.00E-119) | Leucine carboxyl methyltransferase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000032 | details | |
| TreatCFM000116 | details | |
| TreatCFM000137 | membrane coat | details |
| TreatCFM000191 | Protein digestion and absorption translational initiation translation initiation factor activity helicase activity | details |
| TreatCFM000469 | amino acid transmembrane transport amino acid transmembrane transporter activity carbohydrate binding | details |
| TreatCFM000903 | Transcription_related, Transcription factor: HB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex vesicle docking involved in exocytosis attachment of GPI anchor to protein chaperone-mediated protein folding amino acid transmembrane transport translational initiation RNA transport | details |
| TreatCFM000975 | Protein export | details |
| TreatCFM001113 | nucleosome assembly nucleosome | details |
| TreatCFM001375 | homogalacturonan degradation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET SNARE interactions in vesicular transport | details |
| TreatCFM001631 | cytokinins degradation Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytokinin metabolic process glycosyl compound metabolic process Aminoacyl-tRNA biosynthesis Zeatin biosynthesis cytokinin dehydrogenase activity cytoplasmic part Starch and sucrose metabolism | details |
| TreatCFM001633 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, E2: UBC removal of superoxide radicals amino acid transmembrane transport cullin family protein binding N,N-dimethylaniline monooxygenase activity superoxide dismutase activity mitochondrial matrix oxidation-reduction process RNA transport amino acid transmembrane transporter activity NADP binding | details |
| TreatCFM002031 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process cullin family protein binding S-adenosylmethionine-dependent methyltransferase activity methylation | details |
Expression profiles
 Show details about module gene expression profiling |