TreatCFM001121's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of photomorphogenesis | 0.012061596 | GO:0010099 |
| COPI vesicle coat | 0.013783459 | GO:0030126 |
| Transcription_related, Transcription factor: FAR1 | 0.024040353 | TF family |
| Ubiquitin_Proteasome_system, E2: UBC | 0.024040353 | ubs family |
| mRNA surveillance pathway | 0.028625431 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.028625431 | KEGG pathway |
| phosphatidylinositol binding | 0.033390309 | GO:0035091 |
| structural molecule activity | 0.033390309 | GO:0005198 |
| vesicle-mediated transport | 0.045085935 | GO:0016192 |
| signal transduction | 0.045085935 | GO:0007165 |
| intracellular protein transport | 0.049489126 | GO:0006886 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003743 | AT2G29700 (7.00E-63) | ATPH1|pleckstrin homologue 1 |
| CRO_T006514 | AT4G31480 (0) | Coatomer, beta subunit |
| CRO_T012408 | AT1G36340 (2.00E-27) | UBC31|ubiquitin-conjugating enzyme 31 |
| CRO_T016323 | AT2G02410 (2.00E-95) | unknown protein |
| CRO_T017854 | AT4G15090 (1.00E-12) | FAR1|FAR-RED IMPAIRED RESPONSE 1 |
| CRO_T022620 | AT1G18070 (0) | Translation elongation factor EF1A/initiation factor IF2gamma family protein |
| CRO_T032608 | AT1G09660 (9.00E-22) | RNA-binding KH domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000514 | structural molecule activity phosphatidylinositol binding membrane coat vesicle-mediated transport signal transduction intracellular protein transport | details |
| TreatCFM001266 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc xylan catabolic process Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi organization retrograde vesicle-mediated transport, Golgi to ER Golgi transport complex Transcription_related, Transcription factor: FAR1 cytosolic large ribosomal subunit | details |
| TreatCFM001267 | signal transduction cytosolic large ribosomal subunit Ribosome translation maturation of LSU-rRNA transmembrane receptor protein tyrosine kinase activity RNA binding Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X peptidyl-tyrosine phosphorylation phosphatidylinositol binding Transcription_related, Transcription factor: FAR1 | details |
| TreatCFM001268 | cytosolic large ribosomal subunit ESCRT I complex seleno-amino acid biosynthesis L-cysteine desulfhydrase activity cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) protein complex binding cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process translation protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA binding maturation of LSU-rRNA Ribosome Transcription_related, Transcription factor: FAR1 Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001712 | Ubiquitin_Proteasome_system, E2: UBC phosphatidylinositol binding Protein processing in endoplasmic reticulum ubiquitin-dependent protein catabolic process signal transduction protein ubiquitination | details |
Expression profiles
 Show details about module gene expression profiling |