TreatCFM001266's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.003412112 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.003412112 | cazy family |
| xylan catabolic process | 0.006947787 | GO:0045493 |
| Golgi vesicle prefusion complex stabilization | 0.006947787 | GO:0048213 |
| retrograde transport, vesicle recycling within Golgi | 0.006947787 | GO:0000301 |
| Golgi organization | 0.009892553 | GO:0007030 |
| retrograde vesicle-mediated transport, Golgi to ER | 0.009892553 | GO:0006890 |
| Golgi transport complex | 0.01364139 | GO:0017119 |
| Transcription_related, Transcription factor: FAR1 | 0.025214511 | TF family |
| cytosolic large ribosomal subunit | 0.041194722 | GO:0022625 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002748 | AT5G01110 (5.00E-33) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T005138 | - | - |
| CRO_T013663 | AT1G54920 (7.00E-28) | unknown protein |
| CRO_T017854 | AT4G15090 (1.00E-12) | FAR1|FAR-RED IMPAIRED RESPONSE 1 |
| CRO_T018999 | AT1G77940 (1.00E-54) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T020854 | AT2G14690 (4.00E-42) | Glycosyl hydrolase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000165 | stachyose degradation multi-eIF complex eukaryotic translation initiation factor 2 complex Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc eukaryotic translation initiation factor 2B complex mannan catabolic process translation protein import into nucleus xylan catabolic process maturation of LSU-rRNA | details |
| TreatCFM000391 | Ribosome hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc gluconeogenesis I alpha-amylase activity DNA topoisomerase type I activity glucan 1,4-alpha-maltotetraohydrolase activity structural constituent of ribosome malate dehydrogenase (decarboxylating) (NAD+) activity translation resolution of meiotic recombination intermediates DNA topological change mitotic nuclear division malate metabolic process cobalt ion binding Homologous recombination zinc ion binding chromosome mitochondrion DNA repair | details |
| TreatCFM000985 | transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex ATP binding RNA polymerase III activity cytosolic large ribosomal subunit ESCRT I complex NURF complex Transcription_related, Transcription regulator: SNF2 mitochondrial intermembrane space biotin-carboxyl carrier protein assembly fatty acid biosynthesis initiation I seleno-amino acid biosynthesis CCR4-NOT complex octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase Transcription_related, Transcription factor: BES1 cystathionine gamma-lyase activity phosphatidic acid transporter activity L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity protein complex binding NADPH:quinone reductase activity cystathionine beta-lyase activity biotin carboxylase activity nucleosome binding | details |
| TreatCFM001121 | regulation of photomorphogenesis COPI vesicle coat Transcription_related, Transcription factor: FAR1 Ubiquitin_Proteasome_system, E2: UBC mRNA surveillance pathway Ubiquitin mediated proteolysis phosphatidylinositol binding structural molecule activity vesicle-mediated transport signal transduction intracellular protein transport | details |
| TreatCFM001267 | signal transduction cytosolic large ribosomal subunit Ribosome translation maturation of LSU-rRNA transmembrane receptor protein tyrosine kinase activity RNA binding Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X peptidyl-tyrosine phosphorylation phosphatidylinositol binding Transcription_related, Transcription factor: FAR1 | details |
| TreatCFM001268 | cytosolic large ribosomal subunit ESCRT I complex seleno-amino acid biosynthesis L-cysteine desulfhydrase activity cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) protein complex binding cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process translation protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA binding maturation of LSU-rRNA Ribosome Transcription_related, Transcription factor: FAR1 Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001978 | formation of glycosidic bonds, GlycosylTransferases: GTnc xylan biosynthesis transferase activity anisotropic cell growth Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi organization retrograde vesicle-mediated transport, Golgi to ER histone acetylation cellulose biosynthetic process mRNA splicing, via spliceosome Spliceosome histone acetyltransferase complex S-adenosylmethionine-dependent methyltransferase activity ligase activity Golgi transport complex spliceosomal complex | details |
| TreatCFM002169 | carbohydrate kinase activity UDP-D-galactose biosynthesis D-galactose degradation III stachyose degradation UDP-sugars interconversion assembly of large subunit precursor of preribosome Golgi vesicle prefusion complex stabilization phosphotransferase activity, alcohol group as acceptor nucleotide binding retrograde transport, vesicle recycling within Golgi retrograde vesicle-mediated transport, Golgi to ER Golgi organization ribosomal large subunit assembly Golgi transport complex peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |