TreatCFM001131's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chorismate biosynthesis from 3-dehydroquinate | 0.004250857 | plantCyc |
| UDP-D-xylose biosynthesis | 0.004250857 | plantCyc |
| chorismate synthase activity | 0.006947377 | GO:0004107 |
| UDP-glucuronate decarboxylase activity | 0.006947377 | GO:0048040 |
| 5'-3' exonuclease activity | 0.006947377 | GO:0008409 |
| aromatic amino acid family biosynthetic process | 0.013886133 | GO:0009073 |
| chorismate biosynthetic process | 0.013886133 | GO:0009423 |
| DNA-dependent DNA replication | 0.013886133 | GO:0006261 |
| DNA-directed DNA polymerase activity | 0.01993862 | GO:0003887 |
| FMN binding | 0.022171907 | GO:0010181 |
| cellular amino acid biosynthetic process | 0.023396527 | GO:0008652 |
| exocytosis | 0.027002462 | GO:0006887 |
| nucleic acid phosphodiester bond hydrolysis | 0.034543472 | GO:0090305 |
| Insulin signaling pathway | 0.043251011 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001766 | AT1G48850 (7.00E-149) | EMB1144|embryo defective 1144 |
| CRO_T003539 | AT1G08200 (1.00E-27) | AXS2|UDP-D-apiose/UDP-D-xylose synthase 2 |
| CRO_T004311 | AT2G39380 (1.00E-149) | ATEXO70H2|exocyst subunit exo70 family protein H2 |
| CRO_T014464 | AT1G13170 (0) | ORP1D|OSBP(oxysterol binding protein)-related protein 1D |
| CRO_T027551 | AT1G05060 (8.00E-09) | unknown protein |
| CRO_T028723 | - | - |
| CRO_T030553 | AT5G59410 (4.00E-46) | Rab5-interacting family protein |
| CRO_T033105 | AT1G34380 (1.00E-67) | 5'-3' exonuclease family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001593 | heterotrimeric G-protein complex G-protein coupled receptor signaling pathway isoflavonoid biosynthesis II benzoate biosynthesis I (CoA-dependent, β-oxidative) ribonucleoside binding signal transducer activity DNA-directed RNA polymerase activity | details |
| TreatCFM001705 | cytoplasmic translational termination plastid translation endopeptidase activity adenyl-nucleotide exchange factor activity ribosomal large subunit binding chaperone binding isomerase activity regulation of catalytic activity protein homodimerization activity mitochondrial matrix thylakoid Oxidative phosphorylation copper ion binding | details |
| TreatCFM001881 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding viral nucleocapsid intracellular ribonucleoprotein complex Oxidative phosphorylation | details |
| TreatCFM001905 | Oxidative phosphorylation plasma membrane respiratory chain complex I mitochondrial electron transport, NADH to ubiquinone aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mitochondrial respiratory chain complex I 2 iron, 2 sulfur cluster binding proton-transporting ATP synthase activity, rotational mechanism zinc ion binding ATP synthesis coupled proton transport NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane Peroxisome response to oxidative stress | details |
Expression profiles
 Show details about module gene expression profiling |