TreatCFM001881's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| alanyl-tRNA aminoacylation | 0.004432624 | GO:0006419 |
| Ser-tRNA(Ala) hydrolase activity | 0.006436646 | GO:0002196 |
| alanine-tRNA ligase activity | 0.008044024 | GO:0004813 |
| regulation of translational fidelity | 0.008859354 | GO:0006450 |
| tRNA binding | 0.013934735 | GO:0000049 |
| viral nucleocapsid | 0.025060736 | GO:0019013 |
| intracellular ribonucleoprotein complex | 0.025060736 | GO:0030529 |
| Oxidative phosphorylation | 0.043012277 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002417 | AT1G64090 (9.00E-31) | RTNLB3|Reticulan like protein B3 |
| CRO_T005134 | AT3G53940 (0.0000009) | Mitochondrial substrate carrier family protein |
| CRO_T016942 | AT1G01730 (4.00E-30) | unknown protein |
| CRO_T025292 | AT5G66010 (3.00E-10) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T027761 | AT3G16565 (2.00E-44) | alanine-tRNA ligases; nucleic acid binding; ligases, forming aminoacyl-tRNA and related compounds; nucleotide binding; ATP binding |
| CRO_T028723 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001131 | chorismate biosynthesis from 3-dehydroquinate UDP-D-xylose biosynthesis chorismate synthase activity UDP-glucuronate decarboxylase activity 5'-3' exonuclease activity aromatic amino acid family biosynthetic process chorismate biosynthetic process DNA-dependent DNA replication DNA-directed DNA polymerase activity FMN binding cellular amino acid biosynthetic process exocytosis nucleic acid phosphodiester bond hydrolysis Insulin signaling pathway | details |
| TreatCFM001387 | L-mimosine synthase activity beta-pyrazolylalanine synthase activity pyrazolylalanine synthase activity cysteine synthase activity 3-phosphoinositide biosynthesis adenosine ribonucleotides de novo biosynthesis L-cysteine biosynthesis I Ubiquitin_Proteasome_system, E3: U-box Autophagy - animal cellular amino acid biosynthetic process cysteine biosynthetic process from serine plant-type vacuole regulation of cellular process intracellular ribonucleoprotein complex viral nucleocapsid | details |
| TreatCFM001479 | magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity regulation of actin filament polymerization response to very low light intensity stimulus alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding vegetative to reproductive phase transition of meristem actin cytoskeleton integral component of membrane viral nucleocapsid intracellular ribonucleoprotein complex Endocytosis | details |
| TreatCFM001705 | cytoplasmic translational termination plastid translation endopeptidase activity adenyl-nucleotide exchange factor activity ribosomal large subunit binding chaperone binding isomerase activity regulation of catalytic activity protein homodimerization activity mitochondrial matrix thylakoid Oxidative phosphorylation copper ion binding | details |
| TreatCFM001807 | 3-dehydroquinate biosynthesis I 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I GTP cyclohydrolase I activity tetrahydrofolate biosynthetic process tetrahydrobiopterin biosynthetic process translation 7,8-dihydroneopterin 3'-triphosphate biosynthetic process protein homooligomerization tetrahydrofolate biosynthesis II structural constituent of ribosome Folate biosynthesis Biosynthesis of amino acids Ubiquitin_Proteasome_system, E3 adaptor: F-box protein homodimerization activity | details |
| TreatCFM001882 | Ubiquitin_Proteasome_system, E1: ThiF tetrapyrrole biosynthesis I (from glutamate) regulation of actin filament polymerization alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity glutamyl-tRNA reductase activity alanine-tRNA ligase activity protoporphyrinogen IX biosynthetic process regulation of translational fidelity phospholipid translocation actin cytoskeleton very long chain fatty acid biosynthesis I phospholipid-translocating ATPase activity tRNA binding Fatty acid elongation Porphyrin and chlorophyll metabolism | details |
| TreatCFM002002 | adenosine ribonucleotides de novo biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc vacuolar proton-transporting V-type ATPase, V1 domain protein glycosylation ATP hydrolysis coupled proton transport small GTPase mediated signal transduction proton-transporting ATPase activity, rotational mechanism galactosyltransferase activity cell part | details |
| TreatCFM002008 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: TUB Transcription_related, Transcription regulator: SWI/SNF-BAF60b cilium mitochondrial inner membrane peptidase complex removal of superoxide radicals thylakoid membrane organization mitochondrial respiratory chain complex assembly protein processing involved in protein targeting to mitochondrion signal peptide processing protein localization to cilium Protein export phosphatidylinositol binding superoxide dismutase activity mitochondrial matrix serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |