TreatCFM001214's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| steroid biosynthetic process | 1.11E-05 | GO:0006694 |
| 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 4.38E-05 | GO:0003854 |
| oxidation-reduction process | 0.000170951 | GO:0055114 |
| coenzyme binding | 0.000309927 | GO:0050662 |
| L-aspartate oxidase activity | 0.002248884 | GO:0008734 |
| L-aspartate:fumarate oxidoreductase activity | 0.002248884 | GO:0044318 |
| NAD biosynthetic process | 0.002653551 | GO:0009435 |
| formaldehyde oxidation II (glutathione-dependent) | 0.005508129 | plantCyc |
| NAD biosynthesis I (from aspartate) | 0.005508129 | plantCyc |
| phenylethanol biosynthesis | 0.005508129 | plantCyc |
| Alanine, aspartate and glutamate metabolism | 0.00805975 | KEGG pathway |
| acetaldehyde biosynthesis I | 0.012724801 | plantCyc |
| pyruvate fermentation to ethanol II | 0.012724801 | plantCyc |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.025356195 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001033 | AT5G14760 (0) | AO|L-aspartate oxidase; FIN4|FLAGELLIN-INSENSITIVE 4 |
| CRO_T008662 | AT3G16610 (8.00E-50) | pentatricopeptide (PPR) repeat-containing protein |
| CRO_T013757 | AT1G71380 (3.00E-42) | ATCEL3|cellulase 3; ATGH9B3|GLYCOSYL HYDROLASE 9B3 |
| CRO_T016395 | AT1G64710 (6.00E-76) | GroES-like zinc-binding dehydrogenase family protein |
| CRO_T020392 | AT3G27550 (3.00E-106) | RNA-binding CRS1 / YhbY (CRM) domain protein |
| CRO_T022278 | AT4G37880 (2.00E-124) | LisH/CRA/RING-U-box domains-containing protein |
| CRO_T031567 | AT5G19440 (4.00E-41) | NAD(P)-binding Rossmann-fold superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000714 | steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity coenzyme binding Prion diseases Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I L-aspartate:fumarate oxidoreductase activity L-aspartate oxidase activity Alanine, aspartate and glutamate metabolism Mismatch repair formaldehyde oxidation II (glutathione-dependent) NAD biosynthesis I (from aspartate) phenylethanol biosynthesis | details |
| TreatCFM001421 | DNA-directed RNA polymerase activity NAD biosynthesis I (from aspartate) L-aspartate oxidase activity L-aspartate:fumarate oxidoreductase activity transcription, DNA-templated NAD biosynthetic process Alanine, aspartate and glutamate metabolism ribonucleoside binding DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 90S preribosome Purine metabolism | details |
| TreatCFM001696 | DNA-directed RNA polymerase activity NAD biosynthesis I (from aspartate) L-aspartate:fumarate oxidoreductase activity L-aspartate oxidase activity tetrapyrrole binding negative regulation of chlorophyll biosynthetic process NAD biosynthetic process red or far-red light signaling pathway chloroplast-nucleus signaling pathway transcription, DNA-templated ribonucleoside binding Alanine, aspartate and glutamate metabolism MAPK signaling pathway maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA binding phosphoprotein phosphatase activity 90S preribosome integral component of endoplasmic reticulum membrane nuclear envelope | details |
Expression profiles
 Show details about module gene expression profiling |