TreatCFM001696's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA-directed RNA polymerase activity | 0.001468867 | GO:0003899 |
| NAD biosynthesis I (from aspartate) | 0.001860492 | plantCyc |
| L-aspartate:fumarate oxidoreductase activity | 0.003854889 | GO:0044318 |
| L-aspartate oxidase activity | 0.003854889 | GO:0008734 |
| tetrapyrrole binding | 0.004336237 | GO:0046906 |
| negative regulation of chlorophyll biosynthetic process | 0.010113103 | GO:1902325 |
| NAD biosynthetic process | 0.010113103 | GO:0009435 |
| red or far-red light signaling pathway | 0.010113103 | GO:0010017 |
| chloroplast-nucleus signaling pathway | 0.010113103 | GO:0010019 |
| transcription, DNA-templated | 0.012551896 | GO:0006351 |
| ribonucleoside binding | 0.017320363 | GO:0032549 |
| Alanine, aspartate and glutamate metabolism | 0.02211471 | KEGG pathway |
| MAPK signaling pathway | 0.02211471 | KEGG pathway |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.031686529 | GO:0000462 |
| DNA binding | 0.034280938 | GO:0003677 |
| phosphoprotein phosphatase activity | 0.036983737 | GO:0004721 |
| 90S preribosome | 0.044103303 | GO:0030686 |
| integral component of endoplasmic reticulum membrane | 0.044103303 | GO:0030176 |
| nuclear envelope | 0.044103303 | GO:0005635 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001033 | AT5G14760 (0) | AO|L-aspartate oxidase; FIN4|FLAGELLIN-INSENSITIVE 4 |
| CRO_T005345 | AT1G68990 (0) | MGP3|male gametophyte defective 3 |
| CRO_T008508 | AT2G42810 (3.00E-110) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T011591 | AT5G13270 (2.00E-76) | RARE1|REQUIRED FOR ACCD RNA EDITING 1 |
| CRO_T013459 | AT5G45140 (2.00E-13) | NRPC2|nuclear RNA polymerase C2 |
| CRO_T015054 | AT1G69710 (1.00E-16) | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T020193 | AT3G06530 (2.00E-168) | ARM repeat superfamily protein |
| CRO_T024644 | AT5G36722 (3.00E-09) | unknown protein |
| CRO_T031371 | AT2G15630 (1.00E-31) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000714 | steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity coenzyme binding Prion diseases Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I L-aspartate:fumarate oxidoreductase activity L-aspartate oxidase activity Alanine, aspartate and glutamate metabolism Mismatch repair formaldehyde oxidation II (glutathione-dependent) NAD biosynthesis I (from aspartate) phenylethanol biosynthesis | details |
| TreatCFM001214 | steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidation-reduction process coenzyme binding L-aspartate oxidase activity L-aspartate:fumarate oxidoreductase activity NAD biosynthetic process formaldehyde oxidation II (glutathione-dependent) NAD biosynthesis I (from aspartate) phenylethanol biosynthesis Alanine, aspartate and glutamate metabolism acetaldehyde biosynthesis I pyruvate fermentation to ethanol II hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001391 | Cytochrome_P450, Cytochrome P450: CYP720A MAPK signaling pathway enzyme-directed rRNA pseudouridine synthesis negative regulation of chlorophyll biosynthetic process chloroplast-nucleus signaling pathway cotyledon vascular tissue pattern formation red or far-red light signaling pathway mitochondrial RNA metabolic process chloroplast RNA modification reactive oxygen species metabolic process cation transport leaf vascular tissue pattern formation alkaloid metabolic process RNA modification phloem or xylem histogenesis | details |
| TreatCFM001421 | DNA-directed RNA polymerase activity NAD biosynthesis I (from aspartate) L-aspartate oxidase activity L-aspartate:fumarate oxidoreductase activity transcription, DNA-templated NAD biosynthetic process Alanine, aspartate and glutamate metabolism ribonucleoside binding DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 90S preribosome Purine metabolism | details |
| TreatCFM001980 | TCA cycle II (plants and fungi) negative regulation of chlorophyll biosynthetic process chloroplast-nucleus signaling pathway red or far-red light signaling pathway MAPK signaling pathway tetrapyrrole binding Transcription_related, Transcription factor: RWP-RK vesicle docking Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: C3H vesicle fusion nuclear envelope integral component of endoplasmic reticulum membrane SNARE complex | details |
| TreatCFM002003 | chloroplast RNA modification ubiquinone-6 biosynthetic process aerobic respiration III (alternative oxidase pathway) alternative oxidase activity nucleic acid binding NADH dehydrogenase activity RNA secondary structure unwinding | details |
Expression profiles
 Show details about module gene expression profiling |