TreatCFM000714's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| steroid biosynthetic process | 0.000609564 | GO:0006694 |
| 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 0.001029816 | GO:0003854 |
| coenzyme binding | 0.007231787 | GO:0050662 |
| Prion diseases | 0.012813696 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I | 0.015420248 | kinase family |
| L-aspartate:fumarate oxidoreductase activity | 0.017652581 | GO:0044318 |
| L-aspartate oxidase activity | 0.017652581 | GO:0008734 |
| Alanine, aspartate and glutamate metabolism | 0.027681944 | KEGG pathway |
| Mismatch repair | 0.027681944 | KEGG pathway |
| formaldehyde oxidation II (glutathione-dependent) | 0.028432898 | plantCyc |
| NAD biosynthesis I (from aspartate) | 0.028432898 | plantCyc |
| phenylethanol biosynthesis | 0.028432898 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000234 | AT2G40700 (3.00E-40) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T001033 | AT5G14760 (0) | AO|L-aspartate oxidase; FIN4|FLAGELLIN-INSENSITIVE 4 |
| CRO_T001846 | AT1G14140 (2.00E-08) | UCP3|Uncoupling Protein 3 |
| CRO_T004650 | AT2G19870 (4.00E-129) | tRNA/rRNA methyltransferase (SpoU) family protein |
| CRO_T006575 | AT1G04190 (2.00E-15) | TPR3|tetratricopeptide repeat 3 |
| CRO_T007347 | AT1G10740 (0) | alpha/beta-Hydrolases superfamily protein |
| CRO_T013757 | AT1G71380 (3.00E-42) | ATCEL3|cellulase 3; ATGH9B3|GLYCOSYL HYDROLASE 9B3 |
| CRO_T014408 | AT1G05970 (3.00E-52) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T016395 | AT1G64710 (6.00E-76) | GroES-like zinc-binding dehydrogenase family protein |
| CRO_T016864 | AT1G14140 (2.00E-12) | UCP3|Uncoupling Protein 3 |
| CRO_T018228 | AT5G39710 (1.00E-23) | EMB2745|EMBRYO DEFECTIVE 2745 |
| CRO_T018553 | - | - |
| CRO_T019044 | AT5G39040 (0) | ABCB27|ATP-binding cassette B27; ALS1|ALUMINUM SENSITIVE 1; ATTAP2|TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2 |
| CRO_T020980 | AT2G40270 (3.00E-112) | Protein kinase family protein |
| CRO_T022278 | AT4G37880 (2.00E-124) | LisH/CRA/RING-U-box domains-containing protein |
| CRO_T024644 | AT5G36722 (3.00E-09) | unknown protein |
| CRO_T030259 | AT4G35520 (2.00E-17) | MLH3|MUTL protein homolog 3 |
| CRO_T031567 | AT5G19440 (4.00E-41) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T033516 | AT2G37500 (9.00E-28) | arginine biosynthesis protein ArgJ family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000494 | heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis Transcription_related, Transcription factor: BES1 trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) heptaprenyl diphosphate synthase activity 3'-5'-exoribonuclease activity N-acetyltransferase activity hydrolase activity | details |
| TreatCFM000708 | Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I chloroplast RNA modification carbohydrate transmembrane transport leaf vascular tissue pattern formation phloem or xylem histogenesis cotyledon vascular tissue pattern formation mRNA processing Transcription_related, Transcription factor: C2H2 phosphatidylcholine acyl editing phospholipases triacylglycerol degradation | details |
| TreatCFM001071 | Cytochrome_P450, Cytochrome P450: CYP704A Ubiquitin_Proteasome_system, DUB: Josephin GABAergic synapse Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I anion transport integral component of membrane vacuolar membrane amino acid transmembrane transport | details |
| TreatCFM001149 | chloroplast RNA modification Transcription_related, Transcription factor: ERF cotyledon vascular tissue pattern formation leaf vascular tissue pattern formation mRNA processing phloem or xylem histogenesis phosphatidylcholine acyl editing phospholipases triacylglycerol degradation ribosome biogenesis | details |
| TreatCFM001214 | steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidation-reduction process coenzyme binding L-aspartate oxidase activity L-aspartate:fumarate oxidoreductase activity NAD biosynthetic process formaldehyde oxidation II (glutathione-dependent) NAD biosynthesis I (from aspartate) phenylethanol biosynthesis Alanine, aspartate and glutamate metabolism acetaldehyde biosynthesis I pyruvate fermentation to ethanol II hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001421 | DNA-directed RNA polymerase activity NAD biosynthesis I (from aspartate) L-aspartate oxidase activity L-aspartate:fumarate oxidoreductase activity transcription, DNA-templated NAD biosynthetic process Alanine, aspartate and glutamate metabolism ribonucleoside binding DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 90S preribosome Purine metabolism | details |
| TreatCFM001498 | 7,8-dihydroneopterin 3'-triphosphate biosynthetic process tetrahydrofolate biosynthetic process tetrahydrobiopterin biosynthetic process GTP cyclohydrolase I activity tau-protein kinase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III phospholipid remodeling (phosphatidylcholine, yeast) tetrahydrofolate biosynthesis II Folate biosynthesis N-acetyltransferase activity 2-Oxocarboxylic acid metabolism Glycerolipid metabolism phosphatidylcholine acyl editing Transcription_related, Transcription factor: ERF benzoate biosynthesis I (CoA-dependent, β-oxidative) cellular amino acid biosynthetic process response to stimulus single-organism process regulation of cellular process protein homodimerization activity transferase activity, transferring acyl groups | details |
| TreatCFM001696 | DNA-directed RNA polymerase activity NAD biosynthesis I (from aspartate) L-aspartate:fumarate oxidoreductase activity L-aspartate oxidase activity tetrapyrrole binding negative regulation of chlorophyll biosynthetic process NAD biosynthetic process red or far-red light signaling pathway chloroplast-nucleus signaling pathway transcription, DNA-templated ribonucleoside binding Alanine, aspartate and glutamate metabolism MAPK signaling pathway maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA binding phosphoprotein phosphatase activity 90S preribosome integral component of endoplasmic reticulum membrane nuclear envelope | details |
Expression profiles
 Show details about module gene expression profiling |