TreatCFM001287's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pentose-phosphate shunt, non-oxidative branch | 0.010638328 | GO:0009052 |
| protein lipoylation | 0.010638328 | GO:0009249 |
| pentose phosphate pathway (non-oxidative branch) | 0.012505162 | plantCyc |
| Calvin-Benson-Bassham cycle | 0.013234862 | plantCyc |
| Rubisco shunt | 0.013234862 | plantCyc |
| transmembrane receptor protein tyrosine kinase activity | 0.016478664 | GO:0004714 |
| ribonuclease P activity | 0.016478664 | GO:0004526 |
| ribose-5-phosphate isomerase activity | 0.016478664 | GO:0004751 |
| tRNA processing | 0.018219356 | GO:0008033 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.023506229 | GO:0090502 |
| peptidyl-tyrosine phosphorylation | 0.026056602 | GO:0018108 |
| Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X | 0.028284857 | kinase family |
| Transcription_related, Transcription factor: C2C2-Dof | 0.028284857 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000299 | AT2G01290 (6.00E-102) | RPI2|ribose-5-phosphate isomerase 2 |
| CRO_T000954 | AT4G33430 (1.00E-136) | ATSERK3|SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3; BAK1|BRI1-associated receptor kinase; ELG|ELONGATED; RKS10|RECEPTOR KINASES LIKE SERK 10 |
| CRO_T004394 | AT1G04635 (6.00E-56) | EMB1687|EMBRYO DEFECTIVE 1687; POP5|A. thaliana homolog of yeast POP5 |
| CRO_T005613 | AT2G25790 (0) | SKM1|STERILITY-REGULATING KINASE MEMBER 1 |
| CRO_T022925 | AT3G55370 (3.00E-34) | OBP3|OBF-binding protein 3 |
| CRO_T026059 | AT1G18620 (2.00E-130) | TRM3|TON1 Recruiting Motif 3 |
| CRO_T028568 | AT4G37890 (3.00E-15) | EDA40|embryo sac development arrest 40 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000801 | Transcription_related, Transcription factor: C2C2-Dof Antigen processing and presentation metal ion transport cellular transition metal ion homeostasis sulfate transmembrane transport zinc II ion transmembrane transport | details |
| TreatCFM001187 | sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity ribose-5-phosphate isomerase activity chromosome organization steroid biosynthetic process pentose-phosphate shunt, non-oxidative branch Cell cycle - yeast 3-beta-hydroxy-delta5-steroid dehydrogenase activity cellulose catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc cellulase activity Calvin-Benson-Bassham cycle pentose phosphate pathway (non-oxidative branch) plant sterol biosynthesis Rubisco shunt starch biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc chromosome Transcription_related, Transcription factor: C2H2 carbohydrate binding | details |
| TreatCFM001506 | receptor serine/threonine kinase binding kinase activity meristem development phosphorylation secologanin and strictosidine biosynthesis transmembrane receptor protein tyrosine kinase activity Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Transcription_related, Transcription factor: C2C2-Dof | details |
| TreatCFM001872 | spermine and spermidine degradation III hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc mRNA cap binding complex mRNA (guanine-N7-)-methyltransferase activity ribonuclease P activity trehalose-phosphatase activity RNA (guanine-N7)-methylation 7-methylguanosine mRNA capping protein lipoylation malate transmembrane transport malate transmembrane transporter activity trehalose biosynthetic process tRNA processing Transcription_related, Transcription factor: bHLH RNA phosphodiester bond hydrolysis, endonucleolytic | details |
| TreatCFM002093 | Ubiquitin_Proteasome_system, E3 adaptor: DWD UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V PI3K-Akt signaling pathway UDP-sugars interconversion myosin heavy chain kinase activity racemase and epimerase activity, acting on carbohydrates and derivatives chaperone binding MAP kinase kinase kinase activity coenzyme binding Amino sugar and nucleotide sugar metabolism MAPK cascade activation of MAPKK activity | details |
Expression profiles
 Show details about module gene expression profiling |