TreatCFM002093's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.002908659 | ubs family |
| UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) | 0.003190782 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V | 0.003899268 | kinase family |
| PI3K-Akt signaling pathway | 0.004253747 | KEGG pathway |
| UDP-sugars interconversion | 0.004781931 | plantCyc |
| myosin heavy chain kinase activity | 0.010421681 | GO:0016905 |
| racemase and epimerase activity, acting on carbohydrates and derivatives | 0.010421681 | GO:0016857 |
| chaperone binding | 0.013015555 | GO:0051087 |
| MAP kinase kinase kinase activity | 0.013015555 | GO:0004709 |
| coenzyme binding | 0.020275784 | GO:0050662 |
| Amino sugar and nucleotide sugar metabolism | 0.021418771 | KEGG pathway |
| MAPK cascade | 0.026530976 | GO:0000165 |
| activation of MAPKK activity | 0.026530976 | GO:0000186 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001538 | AT1G04140 (4.00E-06) | Transducin family protein / WD-40 repeat family protein |
| CRO_T004353 | AT5G07220 (3.00E-73) | ATBAG3|BCL-2-associated athanogene 3 |
| CRO_T010353 | AT4G23920 (2.00E-23) | ATUGE2|UDP-GLC 4-EPIMERASE 2; UGE2|UDP-D-glucose/UDP-D-galactose 4-epimerase 2 |
| CRO_T019216 | - | - |
| CRO_T026059 | AT1G18620 (2.00E-130) | TRM3|TON1 Recruiting Motif 3 |
| CRO_T026785 | AT2G42960 (0) | Protein kinase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000723 | UFM1 hydrolase activity Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Pentose and glucuronate interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity MAP kinase kinase kinase activity aminopeptidase activity manganese ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc activation of MAPKK activity pectin catabolic process MAPK cascade | details |
| TreatCFM001278 | carbohydrate binding UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) UDP-sugars interconversion hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase racemase and epimerase activity, acting on carbohydrates and derivatives carbohydrate metabolic process Amino sugar and nucleotide sugar metabolism beta-galactosidase activity chaperone binding coenzyme binding response to stimulus response to oxidative stress cytoplasmic, membrane-bounded vesicle | details |
| TreatCFM001287 | pentose-phosphate shunt, non-oxidative branch protein lipoylation pentose phosphate pathway (non-oxidative branch) Calvin-Benson-Bassham cycle Rubisco shunt transmembrane receptor protein tyrosine kinase activity ribonuclease P activity ribose-5-phosphate isomerase activity tRNA processing RNA phosphodiester bond hydrolysis, endonucleolytic peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Transcription_related, Transcription factor: C2C2-Dof | details |
| TreatCFM001982 | starch biosynthesis chloroplast isoamylase complex amylopectin biosynthetic process response to molecule of bacterial origin root morphogenesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V isoamylase activity glycogen metabolic process Arp2/3 complex-mediated actin nucleation ATP binding activation of MAPKK activity multidimensional cell growth trichome morphogenesis Autophagy - yeast Arp2/3 protein complex MAP kinase kinase kinase activity MAPK cascade microtubule-based movement microtubule binding ATPase activity microtubule motor activity Starch and sucrose metabolism kinesin complex microtubule | details |
Expression profiles
 Show details about module gene expression profiling |