TreatCFM001311's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Valine, leucine and isoleucine degradation | 0.001595037 | KEGG pathway |
| L-leucine degradation I | 0.002480253 | plantCyc |
| Transcription_related, Transcription factor: DBP | 0.003900421 | TF family |
| Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X | 0.00633397 | kinase family |
| cation binding | 0.026295574 | GO:0043169 |
| phosphorylation | 0.044379179 | GO:0016310 |
| phosphoprotein phosphatase activity | 0.045404097 | GO:0004721 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001960 | AT2G25070 (2.00E-27) | Protein phosphatase 2C family protein |
| CRO_T009782 | AT2G26610 (0) | Transducin family protein / WD-40 repeat family protein |
| CRO_T011680 | AT4G16210 (2.00E-11) | E-COAH-2|ENOYL-COA HYDRATASE 2; ECHIA|enoyl-CoA hydratase/isomerase A |
| CRO_T011757 | AT2G33470 (9.00E-80) | ATGLTP1|ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1; GLTP1|glycolipid transfer protein 1 |
| CRO_T023455 | AT2G38450 (2.00E-32) | |
| CRO_T029319 | AT3G24550 (4.00E-63) | ATPERK1|proline-rich extensin-like receptor kinase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001472 | Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) endoplasmic reticulum actin cytoskeleton actin filament depolymerization Transcription_related, Transcription factor: HB Regulation of actin cytoskeleton cell membrane part | details |
| TreatCFM001473 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity intramolecular transferase activity cation binding Amino sugar and nucleotide sugar metabolism phosphoprotein phosphatase activity cellulose biosynthetic process carbohydrate transport cell cell redox homeostasis | details |
| TreatCFM001546 | nucleoside triphosphate biosynthetic process succinate metabolic process succinyl-CoA metabolic process Transcription_related, Transcription factor: DBP succinate-CoA ligase (GDP-forming) activity succinate-CoA ligase (ADP-forming) activity cofactor binding coniferin metabolism TCA cycle II (plants and fungi) xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc cation binding tricarboxylic acid cycle mitochondrial matrix phosphoprotein phosphatase activity helicase activity | details |
| TreatCFM001547 | Transcription_related, Transcription factor: DBP coniferin metabolism xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism carbohydrate metabolic process | details |
| TreatCFM001646 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of alternative mRNA splicing, via spliceosome cellular response to nitrogen levels response to sucrose exon-exon junction complex nuclear body Apelin signaling pathway mRNA binding RNA processing Spliceosome | details |
| TreatCFM001864 | Transcription_related, Transcription factor: DBP Ubiquitin_Proteasome_system, E3 adaptor: Cullin negative regulation of photomorphogenesis short-day photoperiodism, flowering cotyledon development hormone-mediated signaling pathway sugar mediated signaling pathway Ubiquitin mediated proteolysis photomorphogenesis cation binding phosphoprotein phosphatase activity ubiquitin protein ligase binding Cul4-RING E3 ubiquitin ligase complex flower development protein polyubiquitination ubiquitin protein ligase activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process cell | details |
| TreatCFM002113 | Oxidative phosphorylation mitochondrial respiratory chain complex IV aerobic respiration I (cytochrome c) proton-transporting ATP synthase activity, rotational mechanism cytochrome-c oxidase activity mitochondrial inner membrane serine-type endopeptidase activity | details |
| TreatCFM002140 | postreplication repair protein K63-linked ubiquitination production of ta-siRNAs involved in RNA interference mRNA export from nucleus Toll and Imd signaling pathway THO complex part of transcription export complex NAD/NADH phosphorylation and dephosphorylation Nicotinate and nicotinamide metabolism Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ligase activity ubiquitin protein ligase activity | details |
Expression profiles
 Show details about module gene expression profiling |