TreatCFM001472's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: DBP | 0.003190546 | TF family |
| flavin biosynthesis I (bacteria and plants) | 0.004513001 | plantCyc |
| endoplasmic reticulum | 0.014212462 | GO:0005783 |
| actin cytoskeleton | 0.019528241 | GO:0015629 |
| actin filament depolymerization | 0.024272122 | GO:0030042 |
| Transcription_related, Transcription factor: HB | 0.029661543 | TF family |
| Regulation of actin cytoskeleton | 0.035013146 | KEGG pathway |
| cell | 0.036012162 | GO:0005623 |
| membrane part | 0.036012162 | GO:0044425 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001960 | AT2G25070 (2.00E-27) | Protein phosphatase 2C family protein |
| CRO_T009379 | - | - |
| CRO_T010126 | AT1G09180 (4.00E-71) | ATSAR1|SECRETION-ASSOCIATED RAS 1; ATSARA1A|secretion-associated RAS super family 1 |
| CRO_T011926 | AT1G28420 (0) | HB-1|homeobox-1; RLT1|RINGLET 1 |
| CRO_T021291 | AT5G03430 (0) | phosphoadenosine phosphosulfate (PAPS) reductase family protein |
| CRO_T022485 | AT5G60170 (9.00E-10) | RNA binding (RRM/RBD/RNP motifs) family protein |
| CRO_T022679 | AT5G66410 (2.00E-32) | PLP3b|phosducin-like protein 3 homolog |
| CRO_T024619 | AT3G54120 (3.00E-38) | Reticulon family protein |
| CRO_T030828 | AT3G46010 (1.00E-59) | ADF1|actin depolymerizing factor 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001311 | Valine, leucine and isoleucine degradation L-leucine degradation I Transcription_related, Transcription factor: DBP Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X cation binding phosphorylation phosphoprotein phosphatase activity | details |
| TreatCFM001473 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity intramolecular transferase activity cation binding Amino sugar and nucleotide sugar metabolism phosphoprotein phosphatase activity cellulose biosynthetic process carbohydrate transport cell cell redox homeostasis | details |
| TreatCFM001544 | coniferin metabolism ceramide metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides Golgi apparatus vacuolar proton-transporting V-type ATPase, V1 domain plant-type vacuole hydrogen ion transmembrane transporter activity | details |
| TreatCFM001546 | nucleoside triphosphate biosynthetic process succinate metabolic process succinyl-CoA metabolic process Transcription_related, Transcription factor: DBP succinate-CoA ligase (GDP-forming) activity succinate-CoA ligase (ADP-forming) activity cofactor binding coniferin metabolism TCA cycle II (plants and fungi) xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc cation binding tricarboxylic acid cycle mitochondrial matrix phosphoprotein phosphatase activity helicase activity | details |
| TreatCFM001547 | Transcription_related, Transcription factor: DBP coniferin metabolism xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism carbohydrate metabolic process | details |
| TreatCFM001625 | Regulation of actin cytoskeleton histone-arginine N-methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity actin cytoskeleton Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family protein serine/threonine kinase activity actin filament depolymerization peptidyl-arginine methylation Wnt signaling pathway regulation of cell shape Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Endocytosis actin binding peptidyl-serine phosphorylation Transcription_related, Transcription factor: HB Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001703 | Transcription_related, Transcription factor: Whirly defense response to fungus transcription from RNA polymerase II promoter positive regulation of transcription from RNA polymerase II promoter formation of glycosidic bonds, GlycosylTransferases: GTnc positive regulation of transcription, DNA-templated core promoter sequence-specific DNA binding transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | details |
| TreatCFM001751 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT histone ubiquitination DNA endoreduplication innate immune response chloride transport glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process protein monoubiquitination actin filament depolymerization trichome branching reproductive structure development glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity voltage-gated chloride channel activity Regulation of actin cytoskeleton regulation of anion transmembrane transport post-embryonic development Transcription_related, Transcription factor: C3H ion transmembrane transport Ubiquitin mediated proteolysis actin cytoskeleton single-organism cellular process protein ubiquitination involved in ubiquitin-dependent protein catabolic process actin binding metal ion binding | details |
| TreatCFM001754 | glycerol-3-phosphate O-acyltransferase activity methionine adenosyltransferase activity GDP-mannose transmembrane transporter activity maintenance of root meristem identity GDP-mannose transmembrane transport S-adenosylmethionine biosynthetic process endoplasmic reticulum DNA replication factor A complex CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family one-carbon metabolic process Prp19 complex Cul4-RING E3 ubiquitin ligase complex carbohydrate transport precatalytic spliceosome membrane part catalytic step 2 spliceosome cytosol mRNA splicing, via spliceosome | details |
| TreatCFM001864 | Transcription_related, Transcription factor: DBP Ubiquitin_Proteasome_system, E3 adaptor: Cullin negative regulation of photomorphogenesis short-day photoperiodism, flowering cotyledon development hormone-mediated signaling pathway sugar mediated signaling pathway Ubiquitin mediated proteolysis photomorphogenesis cation binding phosphoprotein phosphatase activity ubiquitin protein ligase binding Cul4-RING E3 ubiquitin ligase complex flower development protein polyubiquitination ubiquitin protein ligase activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process cell | details |
| TreatCFM001910 | linoleate biosynthesis I (plants) protein kinase regulator activity oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water Ubiquitin_Proteasome_system, E3 adaptor: BTB Fatty acid metabolism regulation of protein kinase activity response to red light Cul3-RING ubiquitin ligase complex membrane part | details |
Expression profiles
 Show details about module gene expression profiling |