TreatCFM001371's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mevalonate pathway I | 0.002303262 | plantCyc |
| DNA ligation involved in DNA repair | 0.012033716 | GO:0051103 |
| lagging strand elongation | 0.012033716 | GO:0006273 |
| protein ADP-ribosylation | 0.012033716 | GO:0006471 |
| regulation of intracellular pH | 0.012629801 | GO:0051453 |
| ATP biosynthetic process | 0.012629801 | GO:0006754 |
| DNA ligase (ATP) activity | 0.012976301 | GO:0003910 |
| NAD+ ADP-ribosyltransferase activity | 0.012976301 | GO:0003950 |
| hydrogen-exporting ATPase activity, phosphorylative mechanism | 0.012976301 | GO:0008553 |
| acetyl-CoA C-acetyltransferase activity | 0.012976301 | GO:0003985 |
| Base excision repair | 0.023367968 | KEGG pathway |
| protein catabolic process | 0.027768405 | GO:0030163 |
| hydrogen ion transmembrane transport | 0.045558557 | GO:1902600 |
| aspartic-type endopeptidase activity | 0.047625946 | GO:0004190 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003781 | AT3G56680 (9.00E-79) | Single-stranded nucleic acid binding R3H protein |
| CRO_T007276 | AT1G03220 (2.00E-53) | Eukaryotic aspartyl protease family protein |
| CRO_T011864 | AT2G31320 (0) | PARP1|POLY(ADP-RIBOSE) POLYMERASE 1 |
| CRO_T020016 | AT1G17260 (0) | AHA10|autoinhibited H(+)-ATPase isoform 10 |
| CRO_T024103 | AT1G21670 (0) | LOCATED IN: cell wall, plant-type cell wall |
| CRO_T033004 | AT5G47720 (2.00E-177) | AACT1|acetoacetyl-CoA thiolase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000052 | details | |
| TreatCFM000185 | auxin biosynthetic process negative regulation of ethylene biosynthetic process lagging strand elongation copper ion export DNA ligation involved in DNA repair response to water shade avoidance negative regulation of indoleacetic acid biosynthetic process via tryptophan copper ion transport protein ADP-ribosylation regulation of transcription, DNA-templated | details |
| TreatCFM001245 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process oxidoreductase activity, acting on a sulfur group of donors thymidylate kinase activity UDP-glycosyltransferase activity DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation uridylate kinase activity NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity Base excision repair Pyrimidine metabolism crocetin esters biosynthesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) transferase activity, transferring hexosyl groups triacylglycerol degradation Transcription_related, Transcription factor: C2H2 NAD binding single-organism metabolic process | details |
| TreatCFM001522 | Base excision repair DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation anion transmembrane transport DNA ligase (ATP) activity inorganic phosphate transmembrane transporter activity NAD+ ADP-ribosyltransferase activity response to stimulus | details |
| TreatCFM002132 | xylulokinase activity xylulose metabolic process external side of plasma membrane carbohydrate phosphorylation multidimensional cell growth response to salt stress Pentose and glucuronate interconversions | details |
Expression profiles
 Show details about module gene expression profiling |